Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05085 ATGAGGGATTCGAATCTGGATTTGCAGGAATCGGGTTGGGAGGAACTTCGAAAGGAAGCGCGTAAGATCGAAGGCGATCTCGACGTCAAGCTCTCTTCCTACGCAAAGCTCGGTGCTAGATTTACGCAAGGAGGTTATGTTGATGCTGCCTCACCACCTGTTGGGTCCAGTAGGTCTTGGAAATCCATGGAAATGGAAATCCAATCTTTGCTCGAGAAACTATTGGATATAAATGATTCCATGAGTAGATGTGCTGCATCTGCTGGACCAGCTACTTCTGTAACGCAAAAGTTGGCTAGGCACAGAGATATTCTTCATGAGTTTACCCAGGAATTTAGACGTACCAAGGGGAACATAAACTCAATGAGGGAACATGCAGAGCTTCTAGGTTCTGTTAGGGATGATATTTCTGATTTTAAGCAGACATCTGGTAGTATGTCACCAAGGATGCAGTTATTACGCGAGAGAGCTGCCATACATGGAAGTACGTCTCATATAGATGATGTGATTAGTCAAGCTCAAGCCACAAGAGCTGTTTTGGGTTCTCAGAGGGCCCTGTTTGGTGATGTTCAAGGAAAAGTGAGGCTTCTCGGAGACAAGTTCCCCATTATTCGTAGCTTGCTTGGTTCGATAAAAAGGCGAAAATCAAGGGATACACTTATTCTTTCAGCAGTCATTGCTGCTTGTACGTTGTTTCTCATCATTTACTGGCTTTCTAAGTAA 723 0.4426 MRDSNLDLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDAASPPVGSSRSWKSMEMEIQSLLEKLLDINDSMSRCAASAGPATSVTQKLARHRDILHEFTQEFRRTKGNINSMREHAELLGSVRDDISDFKQTSGSMSPRMQLLRERAAIHGSTSHIDDVISQAQATRAVLGSQRALFGDVQGKVRLLGDKFPIIRSLLGSIKRRKSRDTLILSAVIAACTLFLIIYWLSK 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05085 240 PIRSF Golgi_SNARE 4 239 IPR023601 GO:0000139|GO:0005801|GO:0006888|GO:0016020
Vifa2g05085 240 Pfam Snare region anchored in the vesicle membrane C-terminus 151 215 - -
Vifa2g05085 240 PANTHER GOS-28 SNARE- RELATED 8 239 IPR023601 GO:0000139|GO:0005801|GO:0006888|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05085 Vifa-Chr2 1519733501 1519745732 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05085 K08495 - gmx:100781813 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05085 2 1519733501 1519745732 Vifa2g05085 2 1519733501 1519745732 ECH