Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05055 ATGGCTCACCGTCATCTTATCGACTCCCTCACCTCCCACATCTCCCTCTACCATTCCCAATCCCCAAACCCTAACCCTAACCCTAACCCTAGATCTTCCATTCTCAAATGGTTCTCTTCTCTCTCAATCCACCAGCGTCTCTCTCATCTCACAATTCTCCATTCCGGTTTCGTTCAGATCATACTCCAAATGATGTCCAAACTCCATTCCAATAACAACCACGGTTGCTTCATTCTCCTGCCGGATCTCGCCTCCCGCGATCCGCCTTTTCTCCCGACTCTCTGCTTCAAGAAATCGCACGGCCTCCTCGCGCGAATGGCTGATTCCGACACCGCCGCGAAATTGATATTCGATAGCGTGCGCCTCTTCGAGTCACGTGAAGGGGAGGATGATGTCGCCGGATGTTCTTGCTCGGTAAGGAATCTCGACGCAGTGACGTTTTCCGTTGAGCTTGTGGAGGATGTGAAGAGATTTGTGGAGGCTATGGATAGGATCTCCGGGGGAGGGTTTCTTAGAGGGGAGGAAGGTGAGATTGGGGAGGATTGGATGGAGTTGAATTGGTTGAAATCTAAGGGGTACTATGGGATTGAGGCTTTTATTGCGAATAGGATTGAGGTTTCTATGAGGTTGGCTTGGTTGAATAGCTGCGGTGGGAAGAAGAGAGGTGTGAAATTGAAGGAGAAGTTGAATGTGGCTGGGGTTGCTGCTAATGTATATTGGAGGAAAAAAGGTTGTGTGGATTGGTGGGGGAATTTGGATTCTGTGACGAGGAAGAAGGTGTTTGACACTATCATTATGAAATCTGCTAAAACTTTGACGTATGAGGTTTTAAAAGTGGCAAGCAGTGCCTCCAAAGATGAAGTTTGGCTATACAGTAGTGGGACGGGAGTTGATAAACTACTTGGCTATAATTGCGCTGCAACTGCTCAAAGGACCATCCGGACATTTTGCGATGATACAGAATTTGGCAGAATTATTACACCAGTCAGCAGTTGTAAAAAGCCTGCAGCTTTAGCCAGAGCCTTTAATTCCTTATCTGTGCTTCAAGACATTAGCATAATGTTAACATCAAGTATTAATAGTGAATATGATATAGGAACTCTTTTCTTTAGTTCGTTGGGTTCTGTCTCTACAATATCTGATTGTATATTAAGAAAATTGAGAGGTTTTCTGATGGTTATTTCACTTGACTGCACAAAACGTGAGCTACTAGAGGAGGAACATGGCAAATCCTCATCGGGTAAACCTAAGGAAAAGGTCGGTCTTTCTAACCGTAAAAAGAAGGGACGGACCCGCAATAAAAAGCAAAATCCTGCCCCAAAAACATCTGTGAGTGGTATTTCATGCGAAAATCATCATAAGGACATTGATTGTGTAATGGACAGTACAAAGATGATTGATTTAACGAAACCTGGGGAACTTCCTCTGGGAAAGGGTACTTCTAAGGGGAGCTCGTCATCAACTGTAAAAGTTGTAGATATTACTCGGGAATCAAATATTGGCAAACCTCGAACTACTCCGAGAAGAAGTAGGAAAGAGAAAAATAAAAATAAAAGCGCCCTTATTGACAATGCAGTTGAAGATTCTCTCAACTCAATTATGCATGCTGCCTCTGCCACTATTATTTCTAAAGGTGAGGTGGCAATATGCGATAGGTCTTTTGATAGTTCTACCATTCAGAATGTCAAACATGACGATTCAATTGGTAATAACACCCTTGCTTCAAATTCAAGCATTAGTTGTTCTCTAAATAGACTTACTAAGGAGAACACCTCTACTGGGAACGTTGAAGGAGAGACTGTTGACAATCTTGCTGAAAGTTGCAATAGTTCAAGTTCTCAGTGTTCATTGCCAAATGAAAGGAAATTATTGTCTTCTGAATTAAATACTTGCGACGTAGAATGTGAAGCTACAACACCGCCTGTACCTGCATTGGAGCATGGTAGTTTCTCCAGCAATGACAATACCTGTTCTTTGAACACAACAGGTGCTGCCAAAGCTGATGTAAAGTCAACTATTCATGACAAACCGATTCGAGAGGTTAATGTAAAAGAATTTAGCAAGTTAAGAGAGAGAGATAGATGTCTATTTGATAGTAGAAACTCTGCTTTCTCAAAATGCAGTCCATATGAATGGCCTGGTATACCTTCTATCTATTTTCCATCTTTTAACTCACATCTCCCACCTGCGACAGACAGATTGCATCTGGATGTTGGGCGTAATTGGCATAATCACTTCTGCCAACCATTTGTTCCCACATTACAGCAAACAAGAAATACACAAACTGAAGGTGGGTGCAACCAAATCCTGTCTCGTTCAATTCCTATGAGTTTTGACTGGCCACCAGTTTTTCGTGGTGGTGTGACCCCATCACCAAATTGTAATTATGACTCCGGTTTCATATCTAGGCAACAATGTAAAATTTCAAAAGGTTTGTCTGTTCACAGCATGCATGTTGATGCAACAACTCCTGATGATGAAAGAAAGTACTCTGGGGATACATTGGATTTACCTGATCTAGTAACTACACAGGAGTTCACAGATGAATTTGACAACCTCTGTGTATCAGAGGAAGAGTATGATTTTCATGCTGTTTCTGGTATAGATTATAATCAATATTTTGGCGGTGGTGTAATGTACTGGAACCCTTCTGAACATTCAGGAAAAGGTTTTTCTCGGCCTCCCTCTCTCAGCTCTGATGACAGTTTATGGGCTTTGCGTGAAGCTGATATGAATAGGACAGTGGATGATATGGTTGCTTTCTCATCTTCATATAGTACAAATGGTTTAACATCACCAACTGCTGCGACATTTTGCTCTCCCTTTGATCCTGTAGGTACTGGGGCCCAGACTGTTGGTTATGTAATGTCAGGTAATGAAATTCCTGGGAAAGTGATGCATTCTTCATCAGTTACAGATGCAGCAGTGGAAGATGATACTTCTGGTTCTTTGAGTAGTAACTTATCTGGAGAAACTGAAGGGAAGACGGGTGATTCACATCCGTATCCCATTCTACGGCCAATAATTATTCCTAACTTTTCAAGGGAAAGGTCTATATGTATTGATCATAAAAGCCCTTGTGTTCCTCCTACCAGGCGGGAGCAGCCTCGCATAAAGCGGCCACCATCACCTGTGGTGCTTTGTGTACCGCGTGCCCCACGTCCTCCCCCACCCTCCCCTGTGAGTGATTCCAGGAAACAAAGGGGTTTTCCAACTGTTAGATCTGGTAGTTCCAGCCCAAGACACTGGGGAATGAGAGGCTGGTATCATGATGGGAGTAATTTAGAGGATGCTTGTTTAAGAATGGATGGTGCTGAAGTTGTGTGGCCTTCCTGGAGAAGTAAAAACCTTGCAGTGCAACCTCTAATCCAACCTTTACCTGCTGCCTTGCTGCAGGACCGCCTGATTGCAATGTCACAGATAGCACGTGACCAGGAACATCCGGATGTCACTATTCCTCTGCAACCTGCCGAGTTACGAAGCTGTTCTGCAACGGGTGCATCTTTATCTTTGATGCATGGAATGCTCCATGATGAGATTGACTCTTTCTGTAAACAGGTTGCCTCAGAAAACATGGCAAGGAGGCCTTACATTAATTGGGCTGTCAAGAGAGTTACCCGATCTCTGCAGGTTCTATGGCCCAGATCCAGGACAAACATATTTGGTTCCAATGCCACTGGTATGGCTCTTCCAACAAGTGATGTTGACCTTGTGGTTTGTCTCCCTCCAGTGAGGAACCTGGAACCTATTAAAGAAGCCGGAATATTGGAAGGTCGTAATGGTATTAAAGAAACATGTCTTCAGCATGCAGCTAGGTACCTTGCTAATCAGGAATGGGTAAAGAATGATTCTCTAAAGACAGTGGAAAATACTGCTATACCTATTATTATGCTCGTGGTGGAAGTACCCCAGGATGTTATCGCTTCATCAGCTCCTACGTTAAATTCGTTAAAAGAAGAGCCACAATGTACAACTGGTGAACATGATTCCAAATCAGTTCGTGTTGACATCAGCTTTAAGTCACCATCACATACAGGGCTCCAAACTACAGGAATGGTTAAGGAGTTGACGGAGCAATTTCCTGCTGCTACTCCTCTTGCTTTGGTGCTAAAACAGTTTTTGGCAGATCGAAGCCTTGACCAGTCCTACTCTGGTGGCTTAAGTTCTTACTGTTTGGTATTATTAATTATACGTTTTCTTCAACATGAGCACCATCTTGGCCGGCCGATCAACCAAAATTACGGAAGTCTTCTGGTGGATTTTCTTTACTTTTTTGGTATCATTACAATTATTTTTTCTTTTAGGAATGTGTTTGACCCCCGTCAAATGCGGATATCAGTGCAGGGAAGTGGACTTTATATAAAGAGAGAGAGAGGTTGTAGCATTGATCCAATTCACATAGATGATCCTCTTTTTCCAACAAATAATGTGGGAAGGAATTGCTTCAGAATCCATCAATGTATTAAGGCATTTTCAGAAGCTTATATTGTTCTTGAAAATGAACTCACGCTCCTAAATAGTGATGGCGAGTCATGCTCTAAGCCATCTTACAGACTGCTTCCAAAAATCATCCCAAGTCTTGATGTATCATAG 4593 0.4287 MAHRHLIDSLTSHISLYHSQSPNPNPNPNPRSSILKWFSSLSIHQRLSHLTILHSGFVQIILQMMSKLHSNNNHGCFILLPDLASRDPPFLPTLCFKKSHGLLARMADSDTAAKLIFDSVRLFESREGEDDVAGCSCSVRNLDAVTFSVELVEDVKRFVEAMDRISGGGFLRGEEGEIGEDWMELNWLKSKGYYGIEAFIANRIEVSMRLAWLNSCGGKKRGVKLKEKLNVAGVAANVYWRKKGCVDWWGNLDSVTRKKVFDTIIMKSAKTLTYEVLKVASSASKDEVWLYSSGTGVDKLLGYNCAATAQRTIRTFCDDTEFGRIITPVSSCKKPAALARAFNSLSVLQDISIMLTSSINSEYDIGTLFFSSLGSVSTISDCILRKLRGFLMVISLDCTKRELLEEEHGKSSSGKPKEKVGLSNRKKKGRTRNKKQNPAPKTSVSGISCENHHKDIDCVMDSTKMIDLTKPGELPLGKGTSKGSSSSTVKVVDITRESNIGKPRTTPRRSRKEKNKNKSALIDNAVEDSLNSIMHAASATIISKGEVAICDRSFDSSTIQNVKHDDSIGNNTLASNSSISCSLNRLTKENTSTGNVEGETVDNLAESCNSSSSQCSLPNERKLLSSELNTCDVECEATTPPVPALEHGSFSSNDNTCSLNTTGAAKADVKSTIHDKPIREVNVKEFSKLRERDRCLFDSRNSAFSKCSPYEWPGIPSIYFPSFNSHLPPATDRLHLDVGRNWHNHFCQPFVPTLQQTRNTQTEGGCNQILSRSIPMSFDWPPVFRGGVTPSPNCNYDSGFISRQQCKISKGLSVHSMHVDATTPDDERKYSGDTLDLPDLVTTQEFTDEFDNLCVSEEEYDFHAVSGIDYNQYFGGGVMYWNPSEHSGKGFSRPPSLSSDDSLWALREADMNRTVDDMVAFSSSYSTNGLTSPTAATFCSPFDPVGTGAQTVGYVMSGNEIPGKVMHSSSVTDAAVEDDTSGSLSSNLSGETEGKTGDSHPYPILRPIIIPNFSRERSICIDHKSPCVPPTRREQPRIKRPPSPVVLCVPRAPRPPPPSPVSDSRKQRGFPTVRSGSSSPRHWGMRGWYHDGSNLEDACLRMDGAEVVWPSWRSKNLAVQPLIQPLPAALLQDRLIAMSQIARDQEHPDVTIPLQPAELRSCSATGASLSLMHGMLHDEIDSFCKQVASENMARRPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGMALPTSDVDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKNDSLKTVENTAIPIIMLVVEVPQDVIASSAPTLNSLKEEPQCTTGEHDSKSVRVDISFKSPSHTGLQTTGMVKELTEQFPAATPLALVLKQFLADRSLDQSYSGGLSSYCLVLLIIRFLQHEHHLGRPINQNYGSLLVDFLYFFGIITIIFSFRNVFDPRQMRISVQGSGLYIKRERGCSIDPIHIDDPLFPTNNVGRNCFRIHQCIKAFSEAYIVLENELTLLNSDGESCSKPSYRLLPKIIPSLDVS 1530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05055 1530 Gene3D Beta Polymerase, domain 2 1190 1307 IPR043519 -
Vifa2g05055 1530 MobiDBLite consensus disorder prediction 1024 1039 - -
Vifa2g05055 1530 MobiDBLite consensus disorder prediction 1024 1079 - -
Vifa2g05055 1530 MobiDBLite consensus disorder prediction 973 994 - -
Vifa2g05055 1530 Gene3D - 1318 1524 - -
Vifa2g05055 1530 PANTHER POLY(A) RNA POLYMERASE 440 1524 IPR045862 GO:0043631|GO:1990817
Vifa2g05055 1530 MobiDBLite consensus disorder prediction 969 1003 - -
Vifa2g05055 1530 MobiDBLite consensus disorder prediction 1065 1079 - -
Vifa2g05055 1530 Pfam Nucleotidyltransferase domain 1203 1252 IPR002934 GO:0016779
Vifa2g05055 1530 SUPERFAMILY PAP/OAS1 substrate-binding domain 1361 1503 - -
Vifa2g05055 1530 MobiDBLite consensus disorder prediction 479 494 - -
Vifa2g05055 1530 MobiDBLite consensus disorder prediction 421 435 - -
Vifa2g05055 1530 MobiDBLite consensus disorder prediction 470 519 - -
Vifa2g05055 1530 SUPERFAMILY Nucleotidyltransferase 1179 1356 IPR043519 -
Vifa2g05055 1530 MobiDBLite consensus disorder prediction 405 448 - -
Vifa2g05055 1530 MobiDBLite consensus disorder prediction 1046 1062 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05055 Vifa-Chr2 1505517660 1505529480 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05055 - - tpra:123920018 2523.81