Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05052 ATGGATTATTCAGCCTACAACCTCAACCAACCACAACAACCTCAATCCTATTACGAATACGATCCATCTCAGATTCAACATCAACCCTACGATCAATCTTACGCTGCATATCAACCGTCATATTACGCTGGGTATAATCATCAATACGCTTATTATCCAACTGATACTACATCGCATCTTCAACATCAACAAACGCATGGCTATTATCAATCTGAACCCGCTCCGGTTCACCCTCCCGGTGTTAACCCTGAACCGGTTCAACACAATCTGATGATTGGGCCATCATCTCAATACAGAGGTAGGGGTGGTAGATCATTCAGGCGGGGTGGTCGTGGTCGAGGTCAGTTCAGTCATGGAAGAGGACGTGGAGTGGGCGGTGGGAGACACTTTCCATCTCATTCTTCTGGACCTGCTATTTCTGATGTACCGGGTTCATCATCAGTCTCAGCTCAAGTGCAAACTGCACCAGTGCAACCGCCGCCACGTGGGGTATTCTGTGATATTTGCAAGATTGAGTGCAATACCCCAGAAGTCATGGAGCTGCATCTGAAAGGAAAAAAACATCTGAAGAATATCAGATTACATGAAGCAAAACTGAGACGCGGTGCTATCAATGCACCACAGAGCGGACAGATTCCTACCTCTCAGTTGAACTCAACGGATCAACCTATTATAACTCAGGAATCTGAAGACCCCATCAAAAATATTAGTTCTGAAATTACAACTGATAGTCAGAAGGTTGACATAATTTCGCAGAATAATGTAGGAGAGACTTCTGATGTTCCAGCTGAAGAAAGTTCTGGTGCAAGAGGCCGTGGATTGAAGCGTAAATTAAGAGGAGGAAAAGCACGAAAACAGACGAGGAATACTGATGGTTCACAACCTGAGCCAGCTGTAGCCATTACATGTGAGTTGTGCAATGTTAAATGCGACACCCAACGTGTTTACCAGGCTCATATTACTGGGAAAAAGCACTTGAAGCGTGCCTATGGTTCCCAAGCTTTGTCTGGAGTAGCTGGGCTTCAAGCACTTTACCCACCTGACATCAACGCTCTAGCCACTGCAATAAATGCTCAAGTTCAACAAGGTGATAATGATCCACAGGTACTTCTGGCTCAGCTCCTGGTGAATGCACTATCTCAAGCACAAGGATCAGGAGCAGCAGCACTGAATGGCTCATTGGCTACTCAGACACCAGCGCCCACATCGGTGGCAGGTTCAAGTTATGATCCCCAGTTGGTGCAGGTACAAGTCTCAGAAATCGCAGCATATGGAAATCCTACAGGTGAATCAAAAAATGAGGCGCCTTCTGCCCAACTTGAGTCAAATGCACAGGAAGTTTCAAATGTTGGCACACAAATTGAAGGCGGAAGTTCTGAAACTAAATAG 1389 0.4572 MDYSAYNLNQPQQPQSYYEYDPSQIQHQPYDQSYAAYQPSYYAGYNHQYAYYPTDTTSHLQHQQTHGYYQSEPAPVHPPGVNPEPVQHNLMIGPSSQYRGRGGRSFRRGGRGRGQFSHGRGRGVGGGRHFPSHSSGPAISDVPGSSSVSAQVQTAPVQPPPRGVFCDICKIECNTPEVMELHLKGKKHLKNIRLHEAKLRRGAINAPQSGQIPTSQLNSTDQPIITQESEDPIKNISSEITTDSQKVDIISQNNVGETSDVPAEESSGARGRGLKRKLRGGKARKQTRNTDGSQPEPAVAITCELCNVKCDTQRVYQAHITGKKHLKRAYGSQALSGVAGLQALYPPDINALATAINAQVQQGDNDPQVLLAQLLVNALSQAQGSGAAALNGSLATQTPAPTSVAGSSYDPQLVQVQVSEIAAYGNPTGESKNEAPSAQLESNAQEVSNVGTQIEGGSSETK 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05052 462 SMART c2h2final6 301 325 IPR013087 -
Vifa2g05052 462 SMART c2h2final6 164 188 IPR013087 -
Vifa2g05052 462 Pfam Zinc-finger of C2H2 type 165 188 - -
Vifa2g05052 462 MobiDBLite consensus disorder prediction 207 261 - -
Vifa2g05052 462 MobiDBLite consensus disorder prediction 92 157 - -
Vifa2g05052 462 MobiDBLite consensus disorder prediction 203 295 - -
Vifa2g05052 462 PANTHER OS06G0651300 PROTEIN-RELATED 10 379 - -
Vifa2g05052 462 Gene3D Classic Zinc Finger 281 330 - -
Vifa2g05052 462 Gene3D Classic Zinc Finger 148 197 - -
Vifa2g05052 462 Pfam Zinc-finger double-stranded RNA-binding 303 325 IPR022755 -
Vifa2g05052 462 MobiDBLite consensus disorder prediction 424 462 - -
Vifa2g05052 462 SUPERFAMILY beta-beta-alpha zinc fingers 156 198 IPR036236 -
Vifa2g05052 462 SUPERFAMILY beta-beta-alpha zinc fingers 300 328 IPR036236 -
Vifa2g05052 462 SMART ZnF_U1_5 298 332 IPR003604 GO:0003676|GO:0008270
Vifa2g05052 462 SMART ZnF_U1_5 161 195 IPR003604 GO:0003676|GO:0008270
Vifa2g05052 462 MobiDBLite consensus disorder prediction 138 156 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05052 - - mtr:25491694 541.962