Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04756 ATGAGTTCAGACAGCCGCAGCCGAAGCCGAAGCAGGAGTAGGAGTCGTAGCCCTGGGATCCGTAAGATTCGCTCTGAACGACATTCCTATCGCGATGCTCCTTACAGGAGAGATTCAAGTCGGGGTTTCAGCCGAGACAATTTGTGCAAGAACTGCAAGAGGCCCGGTCACTATGCTAGAGAGTGCCCTAATGTTGCAGTTTGCCACAATTGTGGCCTTCCTGGGCACATTGCGTCTGAATGCTCCACAAAATCCGTGTGCTGGAATTGCAAAGAACCTGGTCACATGGCCAGCAGTTGTCCAAATGAGGGAATTTGCCACACCTGTGGTAAAACTGGCCACCGTGCTAGGGAGTGCTCAGCTCCAGCAATGCCTCCAGGGGACTTGAGGCTGTGCCACAACTGTTATAAGCAGGGGCACATTGCTGCTGAATGTACAAATGAGAAGGCTTGCAATAACTGTAGGAAAACAGGGCACTTGGCACGTGATTGTCCAAATGACCCAATTTGTAACGTGTGCAATGTTTCTGGACATGTGGCTAGACAATGTCCAAAATCCAACATTATTGGAGATCACAGTGGCAGAGGCAGCTTCCGTGGTGCTGGTGGAGCGGGTGGTGGTGGTTACCGTGATGTCGTGTGCAGGAACTGTCAACAGTTGGGTCATATGAGCCGTGACTGCATGGGCCCCTTGATGATTTGTCACAATTGTGGAGGCCGTGGTCACTTGGCATATGAGTGTCCTTCAGGTCGCTTTATGGATCGCTACCCTAGTGATCGCTTTGTGGATCGATACCCTAGTGATCGCGATCGCTACCCTAGTAGGAGATACTAG 834 0.5132 MSSDSRSRSRSRSRSRSPGIRKIRSERHSYRDAPYRRDSSRGFSRDNLCKNCKRPGHYARECPNVAVCHNCGLPGHIASECSTKSVCWNCKEPGHMASSCPNEGICHTCGKTGHRARECSAPAMPPGDLRLCHNCYKQGHIAAECTNEKACNNCRKTGHLARDCPNDPICNVCNVSGHVARQCPKSNIIGDHSGRGSFRGAGGAGGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPSDRFVDRYPSDRDRYPSRRY 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04756 277 Gene3D - 83 103 - -
Vifa2g04756 277 ProSiteProfiles Zinc finger CCHC-type profile. 132 147 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 ProSiteProfiles Zinc finger CCHC-type profile. 234 249 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 MobiDBLite consensus disorder prediction 1 42 - -
Vifa2g04756 277 SUPERFAMILY Retrovirus zinc finger-like domains 126 167 IPR036875 GO:0003676|GO:0008270
Vifa2g04756 277 Pfam Zinc knuckle 48 64 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 Pfam Zinc knuckle 131 147 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 Pfam Zinc knuckle 150 166 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 Pfam Zinc knuckle 67 82 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 Pfam Zinc knuckle 86 102 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 Pfam Zinc knuckle 169 185 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 Pfam Zinc knuckle 213 227 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 Pfam Zinc knuckle 233 249 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 Pfam Zinc knuckle 105 120 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 SUPERFAMILY Retrovirus zinc finger-like domains 206 251 IPR036875 GO:0003676|GO:0008270
Vifa2g04756 277 ProSiteProfiles Zinc finger CCHC-type profile. 87 102 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 Gene3D - 149 187 - -
Vifa2g04756 277 SUPERFAMILY Retrovirus zinc finger-like domains 85 122 IPR036875 GO:0003676|GO:0008270
Vifa2g04756 277 SMART c2hcfinal6 233 249 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 SMART c2hcfinal6 150 166 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 SMART c2hcfinal6 48 64 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 SMART c2hcfinal6 213 229 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 SMART c2hcfinal6 67 83 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 SMART c2hcfinal6 169 185 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 SMART c2hcfinal6 86 102 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 SMART c2hcfinal6 131 147 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 Gene3D - 209 251 - -
Vifa2g04756 277 ProSiteProfiles Zinc finger CCHC-type profile. 49 64 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 ProSiteProfiles Zinc finger CCHC-type profile. 151 166 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 Gene3D - 3 82 - -
Vifa2g04756 277 Gene3D - 104 148 - -
Vifa2g04756 277 ProSiteProfiles Zinc finger CCHC-type profile. 106 119 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 ProSiteProfiles Zinc finger CCHC-type profile. 170 185 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 ProSiteProfiles Zinc finger CCHC-type profile. 68 81 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 ProSiteProfiles Zinc finger CCHC-type profile. 214 227 IPR001878 GO:0003676|GO:0008270
Vifa2g04756 277 PANTHER - 6 255 - -
Vifa2g04756 277 SUPERFAMILY Retrovirus zinc finger-like domains 40 84 IPR036875 GO:0003676|GO:0008270
Vifa2g04756 277 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04756 Vifa-Chr2 1402683916 1402686510 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04756 K09250 - gmx:100803820 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04756 2 1402683916 1402686510 Vifa2g04756 2 1402683916 1402686510 ECH