Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04745 ATGGAAGCTATCAGAAAGCAAGCTTCCAAGCTTCGAGAACAAGTCGCTCGCCAACAACAGGCTGTGCTGAAACAGTTTGGGGCTGGGGGATATGGAGGTTCGGATAATATGGTAACTGATGAGGCAGAGCTTCAGCAACATCACAAACTTGAGAAGCTTTACATTTCAACACGTGCAGGAAAGCATTATCAAAGGGATATTGTCCGTGGAGTAGAAGCTTATATTGTTACTGGATCAAAGCAAGTTGAAATAGGAACAAAGTTGTCAGAAGATAGCAGGAAATATGGTGCAGAAAATACATGTACCAGTGGTAGTACATTATCAAGAGCTGCACTAAATTATGCACGTGCCCGTGCACAAATGGAGAAGGAACGAGGAAACTTATTAAAAGCTCTCGGCACTCAGGTTGCAGAGCCCTTAAGAGCAATGGTGACAGGTGCTCCGTTGGAGGATGCTAGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGATGCTGAAGCCCAGGCTATTGAAGTTTCTAAACGCCAGGCAAAAGTGAGGGAATCACCGGGCCATGCTGACAATGTTATGAAACTGGAAGCCGCTGAAACAAAGCTGCAAGACCTGAAGGCCAACATGGCCATATTGGGGAAGGAAGCAGCTGCAGCAATGACAGCTGTTGAAGCGCAGCAACAGAGGTTAACGCTTCAGCGTCTTATAGCTATGGTTGAAGCAGAGCGTGCCTATCATCAAAGAGTGCTCGAAGTACTTGATCATCTTGAAGGAGAGATGGTATCAGAACGGCATCGTATTGAAGCCCCTCCTACACCTAGTGTGGACAAAAACATGCCGCCACCTCCATCATACGAAGAAGTGAATGGTGTCTATGCTTCTCAGGAACACAATGGCATAACAGACAATATGGGTTACTTCTTAGGAGAGGTTTTATTTCCCTATCATGCCGAGTCTGAAGTTGAACTAAATTTATCTGTTGGGGACTATATCGTCATTCGAAAGGTGTCAAACAATGGATGGGCTGAGGGTGAATGCAAAGGAAAAGCAGGTTGGTTTCCATTTGGTTATGTCGAAAGGAGGGACCAAGTCCTTGCAAGCAAAGTGGCGGAAGTGTTTTGA 1116 0.4579 MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEAELQQHHKLEKLYISTRAGKHYQRDIVRGVEAYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGSTLSRAALNYARARAQMEKERGNLLKALGTQVAEPLRAMVTGAPLEDARHLAQRYDRMRQDAEAQAIEVSKRQAKVRESPGHADNVMKLEAAETKLQDLKANMAILGKEAAAAMTAVEAQQQRLTLQRLIAMVEAERAYHQRVLEVLDHLEGEMVSERHRIEAPPTPSVDKNMPPPPSYEEVNGVYASQEHNGITDNMGYFLGEVLFPYHAESEVELNLSVGDYIVIRKVSNNGWAEGECKGKAGWFPFGYVERRDQVLASKVAEVF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04745 371 Gene3D Arfaptin homology (AH) domain/BAR domain 45 266 IPR027267 -
Vifa2g04745 371 ProSiteProfiles Src homology 3 (SH3) domain profile. 302 361 IPR001452 GO:0005515
Vifa2g04745 371 Coils Coil 149 169 - -
Vifa2g04745 371 Gene3D SH3 Domains 291 369 - -
Vifa2g04745 371 Coils Coil 1 21 - -
Vifa2g04745 371 Coils Coil 220 240 - -
Vifa2g04745 371 Pfam Variant SH3 domain 309 357 IPR001452 GO:0005515
Vifa2g04745 371 SUPERFAMILY SH3-domain 267 360 IPR036028 GO:0005515
Vifa2g04745 371 SMART SH3_2 305 360 IPR001452 GO:0005515
Vifa2g04745 371 SUPERFAMILY BAR/IMD domain-like 49 258 IPR027267 -
Vifa2g04745 371 Coils Coil 193 213 - -
Vifa2g04745 371 PANTHER SH3 DOMAIN-CONTAINING 16 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04745 Vifa-Chr2 1399747194 1399751127 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04745 - - gmx:100783004 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04745 2 1399747194 1399751127 Vifa2g04745 2 1399747194 1399751127 ECH