Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04722 ATGGCTGCTGATTCCTCTGTAATCTTCAATGGAAATGGCATTGGCAATGGCAATGGTAGTAGTATCAACCCACTGCCTAACCTACAGAGAACTTACCAAGTTGTAGTGGCTGCCACCAAAGATATGGGCATTGGTAAGGATGGAAAGTTGCCATGGAGATTACCTACTGATCTCAAGTTTTTTAAGGAGATAACTATGACGACTAATGAATCCGGGAAGAAGAATGCCGTTGTTATGGGAAGAAAAACATGGGAGAGCATTCCTTTTCAGTTCAGGCCTCTTCCTGGTCGGCTTAATGTTGTTTTGACTCGCTCCGGTAGTTTTGATGTTAAAGCAGCAGAAAATGTTGTAATATGTGGAAGCATGTCTTCTGCGTTGGAACTTTTAGCTGCTTCTCCTTATTGTACGTCGATTGAGAAAATATTTGTCATTGGTGGTGGTGAGATATTTAGAGATGCTCTCAATGCTCCCGAATGTGAAGCTATCCACATCACAGAAATTCACACAAGCATTGAGTGTGACACTTTTATGCCTCCGATTGATTTCACTGTATTTCGGCCATGGTACTCATCCTTTCCTAAGGTGGAAAACAACATTCGATATTCTTTCACCACTTATAGACACGAGGAGTACATGTATCTTAATCTGGTTCAAGAAATCATATCTCAAGGTACCTCCAAAGGTGATAGAACAGGGACTGGGACCTTGTCAAAATTTGGTTGCCAGATGAGGTTCAATCTGCGCAGAGGCTTTCCGCTTCTAACAACTAAGAGAGTATTTTGGCGCGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGCTCAACAAATGCCAAGGTGTTACAGGAAAAAGGCATTCATATATGGGACGATAATGCATCCAGGGAATTCCTTGATAGCATTGGTTTGTCAGAGAGGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCCAGGTATACAAACATGCATAATGACTATACTGGCCAAGGAGTTGATCAGCTTTTAGATGTTATCAACAAGATAAAGCATAATCCTGATGATAGACGGATCATTCTCTCTGCATGGAATCCAGCAGATCTTAAATTGATGGCACTTCCACCCTGTCACATGTCTGCGCAGTTCTATGTAGCAAATGGGGAGTTATCGTGTCAAATGAATCAGCGATCTGCTGATATGGGCCTGGGTGTGCCATTCAACATTGCATCTTATGCCCTCCTGACATGCATGATTGCTCATATTTGTGAACTTGTTCCAGGTGATTTTATCCATGTTCTTGGGGATGCACATGTTTACCAAACTCATGTGAGGCCTTTGCAGGAGCAGCTTCATAACCTGCCAAAACCTTTTCCAACTTTGAAAATCAATTCAAAGAAGAAAGATATGGATTCTTTTGTGGCTACTGATTTCAAGCTCATTGACTATGATCCTCACCAGAAGATTGAGATGAAGATGGCTGTTTAA 1482 0.4224 MAADSSVIFNGNGIGNGNGSSINPLPNLQRTYQVVVAATKDMGIGKDGKLPWRLPTDLKFFKEITMTTNESGKKNAVVMGRKTWESIPFQFRPLPGRLNVVLTRSGSFDVKAAENVVICGSMSSALELLAASPYCTSIEKIFVIGGGEIFRDALNAPECEAIHITEIHTSIECDTFMPPIDFTVFRPWYSSFPKVENNIRYSFTTYRHEEYMYLNLVQEIISQGTSKGDRTGTGTLSKFGCQMRFNLRRGFPLLTTKRVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDDNASREFLDSIGLSEREEGDLGPVYGFQWRHFGARYTNMHNDYTGQGVDQLLDVINKIKHNPDDRRIILSAWNPADLKLMALPPCHMSAQFYVANGELSCQMNQRSADMGLGVPFNIASYALLTCMIAHICELVPGDFIHVLGDAHVYQTHVRPLQEQLHNLPKPFPTLKINSKKKDMDSFVATDFKLIDYDPHQKIEMKMAV 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04722 493 CDD TS_Pyrimidine_HMase 213 446 IPR023451 -
Vifa2g04722 493 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 15 208 - -
Vifa2g04722 493 PANTHER THYMIDYLATE SYNTHASE 1 54 493 IPR045097 GO:0016741
Vifa2g04722 493 SUPERFAMILY Dihydrofolate reductase-like 28 207 IPR024072 -
Vifa2g04722 493 PRINTS Thymidylate synthase family signature 251 272 IPR000398 GO:0004799|GO:0006231
Vifa2g04722 493 PRINTS Thymidylate synthase family signature 388 414 IPR000398 GO:0004799|GO:0006231
Vifa2g04722 493 PRINTS Thymidylate synthase family signature 344 363 IPR000398 GO:0004799|GO:0006231
Vifa2g04722 493 PRINTS Thymidylate synthase family signature 370 385 IPR000398 GO:0004799|GO:0006231
Vifa2g04722 493 PRINTS Thymidylate synthase family signature 426 443 IPR000398 GO:0004799|GO:0006231
Vifa2g04722 493 Pfam Thymidylate synthase 212 493 IPR023451 -
Vifa2g04722 493 PIRSF DHFR-TS 19 208 IPR012262 GO:0004146|GO:0004799|GO:0006730
Vifa2g04722 493 PIRSF DHFR-TS 204 493 IPR012262 GO:0004146|GO:0004799|GO:0006730
Vifa2g04722 493 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 31 208 IPR001796 GO:0004146|GO:0046654
Vifa2g04722 493 Gene3D Dihydrofolate Reductase, subunit A 19 209 IPR024072 -
Vifa2g04722 493 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 210 493 IPR036926 -
Vifa2g04722 493 Pfam Dihydrofolate reductase 33 207 IPR001796 GO:0004146|GO:0046654
Vifa2g04722 493 FunFam Possible thymidylate synthase 204 493 - -
Vifa2g04722 493 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 43 65 IPR017925 GO:0004146
Vifa2g04722 493 ProSitePatterns Thymidylate synthase active site. 355 383 IPR020940 GO:0004799|GO:0006231
Vifa2g04722 493 NCBIfam thymidylate synthase 212 493 IPR000398 GO:0004799|GO:0006231
Vifa2g04722 493 Hamap Thymidylate synthase [thyA]. 210 493 IPR000398 GO:0004799|GO:0006231
Vifa2g04722 493 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 177 493 IPR036926 -
Vifa2g04722 493 CDD DHFR 35 207 IPR001796 GO:0004146|GO:0046654
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04722 Vifa-Chr2 1391783538 1391789150 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04722 K13998 - gmx:547833 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04722 2 1391783538 1391789150 Vifa2g04722 2 1391783538 1391789150 ECH