Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04685 ATGTCTCCTTCCATCCTTCTTCTCCTTACTCTATTCGCAATTGCAGGTTACTTCCTTCTTCTTTATTTTTCTTTTCTAACCATTAGTAACGACTCGCAGTCCTTCATCGGAGTTAACTACGGTCAGATCGCCAACAATCTTCCAGCACCGGAAGTCTCCGCCAGACTCCTTCAATCCACCACCATCGGGAAAGTTCGTATATACGGCGCCGATCCCGCAATCATAAAGTCTCTTGCTAACACCGGTATCGGAATCGTCATCGGAACCGCTAACAGCGACATTCCGATTCTAGCGTCCGATCAAAACGCAGCAAAACAGTGGGGACTTGTTTCACAGCTCGTGCCGGCAATTCGAAATGTCCAAACTGCCCTCAGCTCCGTGGCGCTTGGCGGTAGGGTGAAGGTGTCTACAGTACATTCCATGGCGGTGTTGTCTCGCTCGGATCCACCTTCGTCCGGGTCGTTCAACCCGGGTTTACAAAACACACTCAATCAGTTACTTGCGTTTCTGAGGGATAATAAATCGCCGTTTGCGGTTAACCCGTATCCGTTTTTCGCTTATCAGAGTGACCCGAGACCCGAAACGCTTGCGTTTTGTTTGTTTCAATCTAATTCGGGTCGGGTTGATTCGGGTAACGGAAAGCTTTATACCAATATGTTCGATGCTCAGGTTGATGCCGTGCATTCTGCTCTGAATGCAATGAAGTATGACGACATTGAGATTGTGGTTGCTGAAACAGGATGGCCTTCTAGTGGGGACAGCCATGAAGTAGGACCAAGTGTTGAAAATGCCAAGGCCTATAATGGAAACCTTATTACTCATCTTAGATCATTAGTTGGTACGCCTTTAATACCTGGAAAGTCTGTGGACACATACATTTTTGCACTCTATGATGAAAACCTCAAATCTGGCCCTGGATCCGAACGCGCTTTTGGCCTCTTCAAAAATGATCTTACAATGTCCTATGATGTAGGCTTGGCCAAGTCTAGCCAAAAGAATCCGCCGCCAACTAGTCCAGTTACTCCAGCACCTAGCACTACATGGTGTATTCCAAAAGCAGGAGTTTCTGATGCTCATTTACAGGCCAATATTGATTATGCATGTAGTCAAGGATTAGATTGTAGACCAATACAACCGGGAGGAGTGTGTTTTGATCCCAACACATTACAATCTCATGCTGCTTTTGTAATGAATCTCTACTACCAAACATTTGGTAGAAATCAATGGAACTGTGATTTCTCTCAAACAGCAACACTCACATCTCAAAATCCAAGTTACAATGCTTGCAATTATGTTGGTGGGAGTACCTGA 1311 0.4546 MSPSILLLLTLFAIAGYFLLLYFSFLTISNDSQSFIGVNYGQIANNLPAPEVSARLLQSTTIGKVRIYGADPAIIKSLANTGIGIVIGTANSDIPILASDQNAAKQWGLVSQLVPAIRNVQTALSSVALGGRVKVSTVHSMAVLSRSDPPSSGSFNPGLQNTLNQLLAFLRDNKSPFAVNPYPFFAYQSDPRPETLAFCLFQSNSGRVDSGNGKLYTNMFDAQVDAVHSALNAMKYDDIEIVVAETGWPSSGDSHEVGPSVENAKAYNGNLITHLRSLVGTPLIPGKSVDTYIFALYDENLKSGPGSERAFGLFKNDLTMSYDVGLAKSSQKNPPPTSPVTPAPSTTWCIPKAGVSDAHLQANIDYACSQGLDCRPIQPGGVCFDPNTLQSHAAFVMNLYYQTFGRNQWNCDFSQTATLTSQNPSYNACNYVGGST 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04685 436 FunFam glucan endo-1,3-beta-glucosidase 7 343 432 - -
Vifa2g04685 436 SMART X8_cls 347 431 IPR012946 -
Vifa2g04685 436 SUPERFAMILY (Trans)glycosidases 36 324 IPR017853 -
Vifa2g04685 436 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 23 107 IPR044965 GO:0004553|GO:0005975
Vifa2g04685 436 Pfam Glycosyl hydrolases family 17 112 324 IPR000490 GO:0004553|GO:0005975
Vifa2g04685 436 Pfam Glycosyl hydrolases family 17 36 107 IPR000490 GO:0004553|GO:0005975
Vifa2g04685 436 Gene3D - 343 434 - -
Vifa2g04685 436 Pfam X8 domain 347 418 IPR012946 -
Vifa2g04685 436 ProSitePatterns Glycosyl hydrolases family 17 signature. 239 252 IPR000490 GO:0004553|GO:0005975
Vifa2g04685 436 Gene3D Glycosidases 36 109 - -
Vifa2g04685 436 Gene3D Glycosidases 110 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04685 Vifa-Chr2 1382120155 1382123609 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04685 30 431 Miscellaneous Gene Families AT2G16230 58.469 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04685 - - gmx:100810568 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04685 2 1382120155 1382123609 Vifa2g04685 2 1382120155 1382123609 ECH