Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04681 ATGGCTCAGCAACTCGCGAAGAAGGACGATGACCGCGACGATGAAGCCGAATACTCGCCTTTTACGGGAATTGAAAAGGGGGCGGTTCTTCAGGAGGCAAGGGTTTTTAATGATCCACAACTAGATGCTAGGAGATGTTCACAGGTTATTACAAAGCTCCTATACCTACTGAATCAGGGAGAGACATTTACAAAGACGGAAGCCACAGAAGTTTTCTTTGCTGTGACTAAGCTTTTCCAGTCTAGAGATATGGGATTAAGGAGAATGGTCTACCTGATGATAAAGGAGATCTCTCCCTCTGCAGATGAGGTTATTATTGTCACAAGCTCTCTTATGAAGGACATGAATAGCAAGATTGATATGTATAAGGCCAATGCCATTCGAGTGCTTTGTCGTATTACAGACGGAACCCTTCTTACCCAAATTGAGCGGTATATAAAACAAGCAATTGTAGATAAGAATCCAGTTGTTGCAAGTGCTGCCTTAGTTAGTGGCATTCATCTACTCCAGACGAATCCTGAAATTGTAAAAAGGTGGAGTAATGAGGTTCAGGAAGCTGTTCAATCAAGAGCAGCTCTTGTACAGTTTCATGCACTGGGTTTGCTACACCAGATACGACAGAATGATCGGCTAGCTGTTAGCAAGCTGGTTACCAGCTTGACAAGGGGAACTGTTCGCTCACCTTTAGCCCAGTGCCTGTTGATTCGTTACACAAGTCAGGTTATCCGCGAATCAGGAAATAATACAGAGTCAGGGGACCGCCCCTTCTATGATTATCTTGAGAGTTGCCTTCGTCACAAATCAGAGATGGTGATTTTTGAAGCTGCCAGGGCTATTACAGAGCTCAATGGTGTAACGAGCCGAGAATTAACTCCAGCAATTACCGTTCTTCAGTTATTCTTAAGTTCTTCTAAGCCAGTTTTAAGATTTGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGATACACCCAACATCAGTTACTAACTGCAACATTGACATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCCACTCTTGCTATTACTACACTTTTGAAGACAGGAAATGAATCAAGTGTGGACCGTCTTATGAAGCAGATTACAAATTTCATGTCTGATATAGCCGATGAGTTCAAAATTGTTATTGTTGAAGCAATAAGATCATTGTGCCAGAAGTTCCCGTTAAAATATAGATCTCTGATGAACTTCCTGAGTAACATTCTTAGGGAAGAGGGTGGTTTTGAGTACAAGAAGGCAATTGTAGACTCAATTGTGATTCTCATTAGAGAAATCCCTGATGCAAAGGAAACTGGGTTGCTTCATCTTTGTGAGTTCATTGAAGATTGCGAGTTCACTTATCTGTCTACACAGATACTACACTTCCTAGGAATTGAAGGGCCAAAAACATCAGACCCCAGCAAATATATTCGTTTCGTTTATAATAGAGTACATCTTGAGAATGCAACAGTTAGGGCCGGTGCTTTGAGCACACTGGCAAAGTTTGGTGCTGCAGTTGATGCATTAAAGCCGCGCATATTTGTTCTGCTAAGGCGATGCCTTTTTGACAGTGACGATGAGGTCCGTGATAGAGCAACGCTATATCTAAACACACTTGGAGGTGATGGTTCTGTTGTTGAGACGGATAATGCTGTAAAGGACTTTCTGTTTGGGCCATTTGATATCCCACTTGCCAATCTGGAGACTAGTTTGAAAAATTATGAGCCTTCAGAAGAGGCTTTTGACATTGACTCAGTGCCCAAGGAAGTAAAATCTCAGCCACTTGCAGAGAAGAAAGCCGCTGGGAAAAAGCCAACTGGTTTGGGTGCTCCTCCAAGTGCTCCCTCTTCAACTGCTGATGCCTACCAGAGGATGCTTTCGTCTATTCCAGAGTTTGCTAACTTTGGCAGCCTGTTTAAGTCCTCAGCACCTGTGGAGCTCACTGAAGCAGAGACAGAATATGCAGTTAATGTCATTAAACACATTTTTGACAGGCATGTCGTGTTCCAGTACAACTGCACAAACACGATACCAGAGCAATTATTAGAGCATGTTATTGTATTCGTGGATTCTTCAGAGGCAGATGAATTTTCAGAGGTGTTCTCCAAGCCTCTCAAGTCTCTTCCTTATGATTCACCAGGACAGATTTTTGTGGCATTTGAGAAGCCCGAGGGTGTGCCAGCACTTGGAAAATTTTCTAATGTTCTGAAATTTATTGTTAAAGAGGTTGACCCAACCACTGGTGAGGCTGAAGATGATGGTGTTGAAGATGAATATCAGTTGGAGGATCTGGAGATTGTTTCAGCAGATTACATGTTGAAAGTAGGGGTATCTAATTTCAGGAATGCATGGGAAAGCATGGGCCCTGATTTCGAACGGGTGGATGAGTACGGTCTTGGTCCTAGGGAGAACTTGGCTGAAGCTGTAAATACTGTCACCAACCTTCTTGGCTTGCAGCCCTGTGAGGGTACCGAGGTTGTTCCACCCAATTCAAGATCACACACATGTTTGTTGTCGGGTGTATTCATAGGTAACATAAAGGTGCTTGTGCGGTTGTCTTTTGGACTTGATGGTCCAAAGGATGTTGCAATGAAATTGTCCGTCAGATCCGAGGATGAAACTGTCAGTGATGCCATTCATGAGATTGTAGCTAGCGGATAA 2664 0.4324 MAQQLAKKDDDRDDEAEYSPFTGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKTEATEVFFAVTKLFQSRDMGLRRMVYLMIKEISPSADEVIIVTSSLMKDMNSKIDMYKANAIRVLCRITDGTLLTQIERYIKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALGLLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTSQVIRESGNNTESGDRPFYDYLESCLRHKSEMVIFEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMIHPTSVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVIVEAIRSLCQKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIREIPDAKETGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRFVYNRVHLENATVRAGALSTLAKFGAAVDALKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGSVVETDNAVKDFLFGPFDIPLANLETSLKNYEPSEEAFDIDSVPKEVKSQPLAEKKAAGKKPTGLGAPPSAPSSTADAYQRMLSSIPEFANFGSLFKSSAPVELTEAETEYAVNVIKHIFDRHVVFQYNCTNTIPEQLLEHVIVFVDSSEADEFSEVFSKPLKSLPYDSPGQIFVAFEKPEGVPALGKFSNVLKFIVKEVDPTTGEAEDDGVEDEYQLEDLEIVSADYMLKVGVSNFRNAWESMGPDFERVDEYGLGPRENLAEAVNTVTNLLGLQPCEGTEVVPPNSRSHTCLLSGVFIGNIKVLVRLSFGLDGPKDVAMKLSVRSEDETVSDAIHEIVASG 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04681 887 Gene3D Coatomer, gamma subunit, appendage domain 614 768 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Vifa2g04681 887 FunFam Coatomer subunit gamma 615 768 - -
Vifa2g04681 887 SUPERFAMILY Clathrin adaptor appendage domain 615 771 IPR013041 -
Vifa2g04681 887 PANTHER COATOMER SUBUNIT GAMMA 1 885 IPR017106 -
Vifa2g04681 887 Gene3D - 769 885 IPR012295 -
Vifa2g04681 887 FunFam Coatomer subunit gamma 769 885 - -
Vifa2g04681 887 Gene3D - 23 316 IPR011989 -
Vifa2g04681 887 Gene3D - 334 554 IPR011989 -
Vifa2g04681 887 FunFam Coatomer subunit gamma 333 541 - -
Vifa2g04681 887 Pfam Adaptin N terminal region 29 540 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vifa2g04681 887 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 772 884 IPR009028 GO:0006886|GO:0016192|GO:0030117
Vifa2g04681 887 PIRSF Gamma-COP 7 885 IPR017106 -
Vifa2g04681 887 MobiDBLite consensus disorder prediction 593 619 - -
Vifa2g04681 887 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 770 884 IPR032154 -
Vifa2g04681 887 Pfam Coatomer gamma subunit appendage platform subdomain 622 767 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Vifa2g04681 887 FunFam Coatomer subunit gamma 23 316 - -
Vifa2g04681 887 SUPERFAMILY ARM repeat 28 564 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04681 Vifa-Chr2 1381256679 1381265736 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04681 K17267 - gmx:100791801 1595.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04681 2 1381256679 1381265736 Vifa2g04681 2 1381256679 1381265736 ECH