Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04600 ATGGCAGCACCGAACATGGATCAGTTCGAAGCGTTTTTTAGGAGAGCAGATTTGGATGGAGATGGAAGAATCAGTGGAGCTGAGGCCGTTGGTTTCTTTCAGGGATCCAACTTGCCTAAACACGTTCTCGCTCAGGTATGGATGCATGCTGATCAGTCCAAAACTGGTTTCCTTGGGCGGAATGATTTTTATAATGCTTTGAGATTAGTAACTGTTGCGCAGAGTAAGCGAGATTTAACTCCTGATATTGTGAAGGCGGCGTTGTTTGGTCCGGCTGCTGCTAAAATTCCTCCGCCGCAGATTAATCTTGCTGCTTTACCTCCACAGCGTCAGAATCCCGGGGTTGCTTCTTCTGTTGGGCAGATGAGTGTGAATGCCACACCTACATCTACTCAAAATTTGGCCTATAGAGGACATGGGTTAACAGGCTCTGCTGTGAACCCACAATATCTTCCTTCCCAACAGAATGCTAATATGAGACCGCCTCAATCGCAGGGGTTAGCAGGTTCTGTTGCAAACCAGCAATATCTACCTTCCCAGCAGAACACTAACACGAGACCACCTCAATCACAGGGTTTAGCAGGTTCTGTTTCAAACCAACAATATCTACCTTCACAACAGAGTCCTAATATGAGACCACCTCAATCACAGGGTTTTTCAGGTTTTGTTACAAGCCCACAATATCTCTCTTCCCAGCAGAATCCTATCATGAGACCACCTCAATCACAGGGATTACCAGGTTCTGTTGCAAATCCACAATATCTTCCTTCCCAGCAGAATCCAACCATGAGACCAACTCAACCCTTGCCTGCTGGTAGTGCCCCTGGTCCACAACAATTTATTCCTGCCGGTAGTGCCCCTGGTCCACAACAATTTGTGCCTGCCGGTAGTGCCCCTGGTCCACAGCAATTCAGGCCGGCTGGTAACACTCCCCGTTCATCTCAATCAATGCCCGCTGGTACAGCCCCTCGTCCGCAACAGGGTTTTGCAGGTAGCAATCTCTCAAATGCTAGCAACTCAAACGATTGGAATGGTGGAAGGACTGCTATGGCTCCTTCTAGGCCTGCAGGAATCACTCAATCAGTTGCCTTACAAACACCAACATCACCTTCTCCGGTCTCACCAATGTCCCAGCCAACAGCTATTACCTCTAAAGCATTGACTGTTTCTGGAAATGGGTACCCTTCCAATTCAGCTTTGGACGACGACTTTTTCTCTTCTGCCGCATCTACACCTAAACAAGATCCTATTCGACAGAATTATCCTGTTAGCAGTGCACCGGCCTCATCCTCCACTGTTCCAGTTTCCAGTAATGCCAACCCTGCAAGTAGGCAAAGTTCACTTGATTCATTGCAGAGTGCGTTCTCAATGGCACTTACAAATAGTCAGATTCCGCGGACACATTCTTTACCCAACACAGCTCAGCAAATTTCATCATCAGCTTCTTCTCCACTTACAACATCTGGGAGATCAGTTGGACTTGGAAATACTGCTTCTGACAATTCACAACCTCCGTGGCCAAAAATGAAACCTTCTGATGTGCAGAAGTATGCAAAGGTGTTTATGGAAGTTGACACCGACAGGGATGGGAAAATCACTGGGGAGCAGGCACGCAGTCTATTTTTAAGTTGGAGATTACCGATAGATGTCTTAAAGAAGGTGTGGGATTTATCTGATCAGGATAGTGATAGCATGCTCTCTTTGAAGGAGTTTTGCTTTGCTCTTTATTTGATGGAGCGGTATAGGGAAGGCCGTCCTCTTCCGCAGTCTCTTCCAAGTAATGTTATATTTGACGAAACATTGATGTCTATGACGGGCCATCCAAAAATCCCTCATGGAAATGCAGCATGGGGTGTAGGCCAAGGTTTTCAGCAGCAACAAGGAATGCCAGGTACTCGGCCAGTGGCACCAGCAGCTGGTTTCAGGCCACCAGTGCAAGGAACAGGAACGCCTGCTCGGGCTGATGGCACTGTGGTGCCTGATCAGAAAAAGTTTGGAACATCTGCGTTGGATGATTCCTTTTTGAATGACACAGATGATAGTAAGCAAAATATCGAGACTGCAGAGAAAAAGGCTGAAGAAGTGCAGAATATGATATTGGATTCAAAAGAGAAGATTGAGTTGTACCGCAACAAAATGCAGGAATTGGTCCTGTATAAAAGCAGATGTGATAACCGCCTAAATGAGATTACAGAAAGGGCATCTGCAGATAAGCGTGAGGCAGAATCATTGGGCAAGAAATACGAAGAGAAATACAAACAAGTTGCAGAAATAGCATCGAAATTGACTATAGAAGAAGCTAAACTTCGTGATATACAGGAAAGGAAAACAGAGTTGCAGCAAGCCATCGTCAAAATGGAACAAGGAGGCAGTGCAGATGGCATTCTTCAGGTTCGTGCCGATCGCATACAATCAGATCTTGAGCAGTTATTTGGGGCTCTTGCAGAACGGTGCAAGAAACATGGGATAGATGTGAAGTCAATTGCAATGGTTCAGCTTCCTGATGGTTGGCAACCTGGAAATCCAGAGGGGGCAGCTGTTTGGGACGAAGATTGGGATAAGTTTGAAGATGAAGGATTTGCCAATGATCTCACTTTTGATATGAAAAGCGCATCTTCAGAGCCAAAACCTTCATTCATTCCCGGAGAACAAAATTCCTTTGACGATAACCCAGTTCATGATTCGCCTGTGAATGCAAATGGGAGGCAAGAAAATTTCACTAATGGTGATTATACAGTTGAGGAGGAATCTTCTTATGCACACAGTGAAGATGATTTGGCAAGAAGTCCTCGCGAAAGCCCATTTGTAAGGAATACAGTGGAGAGCCCTTCAAAAGAATTTTCAACTTCTCCTTTTGCAAAAAGTTCCGAAGCAGATGCAGAAACACACAGAAGTTTTGACGAATCAACCTGGGGTGCATTTGACAATAATGATGACGTGGACTCGGTGTGGGGTTTTAACCCCAAGGACTCTGACTTGGAGAAGCAGGGAGATTCCTTTCAATCTGGTGATTTTGGCTTAAACCCGGTTAGAACAGGAACTACATTTACAGATGGAGCTTCCAAGGCAAAAAGCCCATTTGCTTTTGACGATTCAGTGCCTGGAACTCCATTTTCCAAGTTTGGAAACTCTCCAAGGTACAGCGAGGCAGGGGATCACTTTGACAGCAGCAGGGATTTTGGAAACAATTTTGGCAACAGTCACGAAAAATTTTCAAGGTTTGATTCCATGAGTAGCAGCAAAGATTTCGGTTTTGGTGGTGGTCAGGGACATGCAAGGTTCGACTCAATTAGTAGCAGCAAGGACTTAGGCTACAGTGCTCCATTCTCTTTCGATGACACTGATCCATTCGGCTCTTCTGGCCCATTTAAGGTCTCTTCAGAGAATCAATCTCCAAAGAAAGGCTCGGATAAATGGAGTGCATTCTAG 3429 0.4561 MAAPNMDQFEAFFRRADLDGDGRISGAEAVGFFQGSNLPKHVLAQVWMHADQSKTGFLGRNDFYNALRLVTVAQSKRDLTPDIVKAALFGPAAAKIPPPQINLAALPPQRQNPGVASSVGQMSVNATPTSTQNLAYRGHGLTGSAVNPQYLPSQQNANMRPPQSQGLAGSVANQQYLPSQQNTNTRPPQSQGLAGSVSNQQYLPSQQSPNMRPPQSQGFSGFVTSPQYLSSQQNPIMRPPQSQGLPGSVANPQYLPSQQNPTMRPTQPLPAGSAPGPQQFIPAGSAPGPQQFVPAGSAPGPQQFRPAGNTPRSSQSMPAGTAPRPQQGFAGSNLSNASNSNDWNGGRTAMAPSRPAGITQSVALQTPTSPSPVSPMSQPTAITSKALTVSGNGYPSNSALDDDFFSSAASTPKQDPIRQNYPVSSAPASSSTVPVSSNANPASRQSSLDSLQSAFSMALTNSQIPRTHSLPNTAQQISSSASSPLTTSGRSVGLGNTASDNSQPPWPKMKPSDVQKYAKVFMEVDTDRDGKITGEQARSLFLSWRLPIDVLKKVWDLSDQDSDSMLSLKEFCFALYLMERYREGRPLPQSLPSNVIFDETLMSMTGHPKIPHGNAAWGVGQGFQQQQGMPGTRPVAPAAGFRPPVQGTGTPARADGTVVPDQKKFGTSALDDSFLNDTDDSKQNIETAEKKAEEVQNMILDSKEKIELYRNKMQELVLYKSRCDNRLNEITERASADKREAESLGKKYEEKYKQVAEIASKLTIEEAKLRDIQERKTELQQAIVKMEQGGSADGILQVRADRIQSDLEQLFGALAERCKKHGIDVKSIAMVQLPDGWQPGNPEGAAVWDEDWDKFEDEGFANDLTFDMKSASSEPKPSFIPGEQNSFDDNPVHDSPVNANGRQENFTNGDYTVEEESSYAHSEDDLARSPRESPFVRNTVESPSKEFSTSPFAKSSEADAETHRSFDESTWGAFDNNDDVDSVWGFNPKDSDLEKQGDSFQSGDFGLNPVRTGTTFTDGASKAKSPFAFDDSVPGTPFSKFGNSPRYSEAGDHFDSSRDFGNNFGNSHEKFSRFDSMSSSKDFGFGGGQGHARFDSISSSKDLGYSAPFSFDDTDPFGSSGPFKVSSENQSPKKGSDKWSAF 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04600 1142 MobiDBLite consensus disorder prediction 466 511 - -
Vifa2g04600 1142 PANTHER EH DOMAIN 3 1081 - -
Vifa2g04600 1142 MobiDBLite consensus disorder prediction 1120 1142 - -
Vifa2g04600 1142 Pfam EF hand 10 26 IPR002048 GO:0005509
Vifa2g04600 1142 MobiDBLite consensus disorder prediction 916 931 - -
Vifa2g04600 1142 MobiDBLite consensus disorder prediction 146 168 - -
Vifa2g04600 1142 MobiDBLite consensus disorder prediction 405 449 - -
Vifa2g04600 1142 Coils Coil 762 789 - -
Vifa2g04600 1142 MobiDBLite consensus disorder prediction 132 168 - -
Vifa2g04600 1142 SUPERFAMILY EF-hand 503 596 IPR011992 -
Vifa2g04600 1142 ProSiteProfiles EF-hand calcium-binding domain profile. 512 547 IPR002048 GO:0005509
Vifa2g04600 1142 MobiDBLite consensus disorder prediction 201 267 - -
Vifa2g04600 1142 Coils Coil 678 712 - -
Vifa2g04600 1142 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Vifa2g04600 1142 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Vifa2g04600 1142 Gene3D - 507 597 - -
Vifa2g04600 1142 MobiDBLite consensus disorder prediction 868 915 - -
Vifa2g04600 1142 Gene3D - 3 102 - -
Vifa2g04600 1142 MobiDBLite consensus disorder prediction 466 508 - -
Vifa2g04600 1142 SUPERFAMILY EF-hand 5 83 IPR011992 -
Vifa2g04600 1142 CDD EH 517 583 IPR000261 GO:0005515
Vifa2g04600 1142 ProSiteProfiles EF-hand calcium-binding domain profile. 548 581 IPR002048 GO:0005509
Vifa2g04600 1142 ProSiteProfiles EH domain profile. 513 596 IPR000261 GO:0005515
Vifa2g04600 1142 ProSiteProfiles EH domain profile. 5 95 IPR000261 GO:0005515
Vifa2g04600 1142 MobiDBLite consensus disorder prediction 201 353 - -
Vifa2g04600 1142 CDD EH 9 75 IPR000261 GO:0005515
Vifa2g04600 1142 SMART eh_3 1 93 IPR000261 GO:0005515
Vifa2g04600 1142 SMART eh_3 506 601 IPR000261 GO:0005515
Vifa2g04600 1142 MobiDBLite consensus disorder prediction 868 1008 - -
Vifa2g04600 1142 Pfam Cytoskeletal-regulatory complex EF hand 507 595 IPR000261 GO:0005515
Vifa2g04600 1142 SMART efh_1 8 36 IPR002048 GO:0005509
Vifa2g04600 1142 SMART efh_1 42 70 IPR002048 GO:0005509
Vifa2g04600 1142 SMART efh_1 516 544 IPR002048 GO:0005509
Vifa2g04600 1142 SMART efh_1 550 578 IPR002048 GO:0005509
Vifa2g04600 1142 MobiDBLite consensus disorder prediction 303 347 - -
Vifa2g04600 1142 MobiDBLite consensus disorder prediction 1033 1061 - -
Vifa2g04600 1142 MobiDBLite consensus disorder prediction 935 956 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04600 Vifa-Chr2 1356718245 1356729467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04600 1 89 EF-hand Containing Proteins AT1G20760 28.090 5.15e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04600 K12472 - tpra:123899274 1710.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04600 2 1356718245 1356729467 Vifa2g04600 2 1356718245 1356729467 ECH