Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04593 ATGGGCGAGGTATCTGAAACAACAACAACCATGACGACGACAACAACCACCAAGAGGAAGAAGAAGGGTCGTCCTTCTCTTTTGGATCTTCAAAAACGATCTCTCAAAAAACAACAAAAACATCACCAAAACCCCAATTCAATTCATTCCAATTCCATCAACGATGAAGATGAACGCATACTCAAGAAACAAAAACTCTTACAAGCTTTTAATTCCAATCTCCAAAACCATAACCCTCCCGCATTATTCCCCAATTCCAATTCCGATCCCCTAATTCACCCTATCGGATCAGATCATCATAACGATGGAAAGGTTCGGAAAGCGACTGACAGTAAACATGGTTCGCAGGTTGTGTCCGGTCCCACTACACCTTTGCCAGACAAAAAGCTCTTGCTGTTTATCCTTGACAGACTTCAAAAGAAGGACACACATGGGGTTTTCTCTGAGCCGGTGGATCCAGAAGAGCTCCCTGATTATCATGATATCGTTAAGCACCCTATGGATTTTGGAACTATAAGAAAGAAATTGGACGAGGGGTTGTATATCTGCCTTGAACAGTTTGAGTTTTTGGTATTTATGAACAATTGCCATATTTCACCAGCCAAGCAAACACACTTACTTCCCTCCCTTATTTGGTTGCTTCTTAATGACGTGTTCTTGGTATGCTCTAATGCAATGCAATACAATTCATCAGACACTATTTACTATCGGCAGGCTCGAGCCATGCAAGAGATAGCAAAGAAGGATTTTGAGAATCTAAGACAAGATAGTGACGATGAGGATGAAGACGATGATGATAGTGAACCACCACCACCCAAAATTGTGCAGAGGGGAAGGCCACCGGGCAAACACACGAAAAAGTCATTGGGCACGTCTCCGTCTGAGCTTGTTGTTCCCGAATCTTTCTCGGATGCAACTCTTGCTTCAGTTGGGGATATTGCTAGTGGTTCCAATGGTTATAATCTCAGAAAAGTAGTAAGCAAATTTCAGCCTACAGATGCATCAGCCAGGTCTTACCACAATAACAGTGGAGGTTACACAAATTTGACATCTGAATGGGAGAATGAATTTCCACCTTCTGTTGTAAAAGCTGTGTTAAGGTATGGAAAGAAGCAGTTCACAGTTGACGAGACCAGGCGTGACACTTACAGAAATCCAGTTCCTGTAGGAAATGAACCACCGGTATTGACCGCATTTGAAGATAATTTCAAGCAGCTTCTTTCAGTCGGTTTACATGTGAAGCACAGCTATGCAAGAAGCCTAGCCAATTTTGCTGCAAACCTTGGTCCCGTTGCTTGGAAAGTTGCTGCTAGGAAAATCAGCAGTGTTTTGCCCCCAGGACATGAATTTGGTCCTGGATGGGTATCCGACGATGATGTGCCACAAAGGCAACACTCTGCGGTTCGTGATGAGAGAAATTCGGACACTCCTGTACAAGAGGATTATAGAAGTAGATTTTCTTCTCCATCAAGAATGTTCTCTCTTGCAAATGCATCACCATTGCAAAGTGGAGATATGGTAATGAACAGAGAATTCAGTTACCAAAACGAAATGAATCCAAGCAGCAGTGTTAGTGGCGGGAATGAATCCATGATTCATGGGATGATTCAGCAGGAACCCATGGCGCAGTCTGATGATTTTGGTTCAAATGGACGATTAGGCTCTAATTTTTCACCTCAAATGAAGATGGTAAGACTTGCTGACATAACCGGCTCTTCAAATGCCGGTAATGCTCCTCAAATGTTAGACATGGATACCATACACAACTTGTCCAGTCAAACTGCTCCTACAAATGTTAATCCGACAGCTCTCAAGGCCCAATTCTTCAACAACTCAAGTCAATCAGATTCCAGCAATTTATCAGGTCTGGAATCTGGATTTGAGTCACAAAGATCGTCTCATGGGCTAGCCGGAAATTCGTCTTGGCAAGGATCAGAAGCTCCTACTAAGCAACAGAGTTCTTTTTCACATGCTAGTGACTTGAATGGGATGATTGAGGCAACAAATTCACGGAGCTCCAATGTCGAAACTGGTCCTCAGCTGCAGCCAAATCTTGCATTGCAGCTCTGA 2070 0.4324 MGEVSETTTTMTTTTTTKRKKKGRPSLLDLQKRSLKKQQKHHQNPNSIHSNSINDEDERILKKQKLLQAFNSNLQNHNPPALFPNSNSDPLIHPIGSDHHNDGKVRKATDSKHGSQVVSGPTTPLPDKKLLLFILDRLQKKDTHGVFSEPVDPEELPDYHDIVKHPMDFGTIRKKLDEGLYICLEQFEFLVFMNNCHISPAKQTHLLPSLIWLLLNDVFLVCSNAMQYNSSDTIYYRQARAMQEIAKKDFENLRQDSDDEDEDDDDSEPPPPKIVQRGRPPGKHTKKSLGTSPSELVVPESFSDATLASVGDIASGSNGYNLRKVVSKFQPTDASARSYHNNSGGYTNLTSEWENEFPPSVVKAVLRYGKKQFTVDETRRDTYRNPVPVGNEPPVLTAFEDNFKQLLSVGLHVKHSYARSLANFAANLGPVAWKVAARKISSVLPPGHEFGPGWVSDDDVPQRQHSAVRDERNSDTPVQEDYRSRFSSPSRMFSLANASPLQSGDMVMNREFSYQNEMNPSSSVSGGNESMIHGMIQQEPMAQSDDFGSNGRLGSNFSPQMKMVRLADITGSSNAGNAPQMLDMDTIHNLSSQTAPTNVNPTALKAQFFNNSSQSDSSNLSGLESGFESQRSSHGLAGNSSWQGSEAPTKQQSSFSHASDLNGMIEATNSRSSNVETGPQLQPNLALQL 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04593 689 PRINTS Bromodomain signature 142 155 IPR001487 GO:0005515
Vifa2g04593 689 PRINTS Bromodomain signature 156 172 IPR001487 GO:0005515
Vifa2g04593 689 PRINTS Bromodomain signature 172 190 IPR001487 GO:0005515
Vifa2g04593 689 PRINTS Bromodomain signature 217 236 IPR001487 GO:0005515
Vifa2g04593 689 Gene3D - 125 268 IPR036427 GO:0005515
Vifa2g04593 689 PANTHER BROMODOMAIN CONTAINING PROTEIN 17 688 - -
Vifa2g04593 689 Pfam Bromodomain 134 240 IPR001487 GO:0005515
Vifa2g04593 689 SMART bromo_6 120 255 IPR001487 GO:0005515
Vifa2g04593 689 MobiDBLite consensus disorder prediction 612 656 - -
Vifa2g04593 689 MobiDBLite consensus disorder prediction 95 111 - -
Vifa2g04593 689 MobiDBLite consensus disorder prediction 255 295 - -
Vifa2g04593 689 CDD Bromodomain 127 250 - -
Vifa2g04593 689 MobiDBLite consensus disorder prediction 669 689 - -
Vifa2g04593 689 MobiDBLite consensus disorder prediction 462 479 - -
Vifa2g04593 689 MobiDBLite consensus disorder prediction 451 486 - -
Vifa2g04593 689 Coils Coil 236 256 - -
Vifa2g04593 689 MobiDBLite consensus disorder prediction 1 16 - -
Vifa2g04593 689 SUPERFAMILY Bromodomain 122 260 IPR036427 GO:0005515
Vifa2g04593 689 MobiDBLite consensus disorder prediction 1 55 - -
Vifa2g04593 689 MobiDBLite consensus disorder prediction 74 121 - -
Vifa2g04593 689 ProSiteProfiles Bromodomain profile. 139 236 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04593 Vifa-Chr2 1354067479 1354071770 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04593 K22184 - gmx:100783010 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04593 2 1354067479 1354071770 Vifa2g04593 2 1354067479 1354071770 ECH