Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04587 ATGGAACTTCATCGCTTAGGGCTTCTCACTTTTCTCTCTATACTACAGGTTTGGTTAATTTTATCTTTAACAGAAGCAGAAATTTTATCCTCAAGGCTTCTTTTGGCCTCTAATGATAGAACACCTCGGGAAAGGCATTCTAAGGATTACTGTTCAATGTATGACATTTGTGGAAAGAGAAGTGATGGTAAAGTAGTGAATTGTCCATTTGGTTCTCCTGCTGTGAAGCCAGATGATTTGCTTTCATCGAAGATCCAAAGTTTGTGTCCAACTATTACTGGGAACGTTTGCTGTACGGAAGCTCAGTTTGAAACATTAAGGACGCAAGTTCAGCAGGTTATTCCTTTTCTTGTAGGTTGTCCGGCATGTTTAAGAAACTTTCTGAATTTATTCTGCGAGCTTACATGCTCTCCCGATCAGAGTTTATTTATCAATGTGACTTCAGTGGACAAGGTTGGTGGTAATTTGACAGTGGGTGGCATCGATTATTTTGTAAGTGACACATTTGGGGATGGATTATATGACTCCTGCAAGGATGTAAAGTTTGGCACCACAAATTCTAAGGCTATACAATTTGTTGGTGGCGGTGCTCAAAATGTTAAAGAGTGGTTTGCTTTTATTGGCAAAAAAGCACCCCCTAATGGTCTTGGTTCACCATATGCAATTACATTCCCGGAAAATGCAATTAAGTCATCTGGGATGGAACCTATGAATGTTTCATCTTATTCCTGCAGTGATATTTCTCTTGGCTGTTCTTGTGGTGACTGTCCTTCATCTTCAGTATGCTCTAATTCATCTTCAAGTACAACCCAAAAGAAGGATTCATGCTCCTTGAAAGTTGGGACTTTAACGGTTCAGTGTGTTGATTTGACTTTAACAGTCTTATACATCATACTGATATGCGTGTTCTTCGGTTGGGGGTTGTATCATCGAGTGAGGGAAAGAAAGCCGGTATATAGAACAAAGTCAGTGTCTAATGTCACTAATGGTGGCATGCTGTATTCTCATAATCAGGAGAAGGAGGAGAACCTCCCAATGCACCAGATTATTGAAGATGTTTCTCAAAACAGAAACGAAGTACGACTCTCTGCCGTGCAAGGATACATGTCAAATTTTTACAGGAAGTATGGATTGTATGTAGCTAGAAACCCAAATGTGGTCTTGGCTTCATCTTTGGCTATAGTTATTCTACTTTGTGTAGGTCTAATCAGATTAAAGGTTGAGACGCGGCCCGAGAAGCTCTGGGTGGGACCTGGGAGTAAAGCAGCTGAAGAGAAGCAGTTTTTTGACAGCCATCTTGCTCCGTTTTACAGAATTGAACAGCTCATACTGGGAACAGTTCCAGATGATGTGAACAGTACAGCACCAAGAATTGTGTCAGAGGACAACATTAAATTTCTGTTTGAAGTACAAAAGAAGGTTGATGCAATTCGTGCTAATCATTCTGGCTTGATGGTATCTCTAAAAGACATTTGTATGAAGCCACTAGACACAGATTGTGCCACTCAAAGCATCCTGCAGTACTTCAAAATGGATCCTGACAATTTTGACAATTATGGTGGAGTTGACCATCTCAGTTACTGTTTTGAGCATTATTCCTCAGCAGATCAATGTATGAGTGCATTTAAAGGTCCTCTTGATCCAAGCACTGTATTAGGAGGCTTTTCTGGGAATGACTATTCTGGGGCTTCTGCATTTATTATAACTTATCCAGTAAATAATGCTATTGATAAAGAAGGCAATGAAACTGCAAAGGCAGTTGCTTGGGAGAAGGCCTTTATTCAGTTAGTGAAGAATGAGCTGTTACCAATGGCACAATCAAAAAATTTGACACTTGCTTTTTCATCTGAATGCTCTATTGAGGAAGAACTGAAAAGAGAAAGTACTGCAGATGTTATTACTATATTGGTCAGCTATCTTGTGATGTTTGCTTATATATCTCTTACTTTAGGGGATACACCTCAGCTTTCTTCTTTCTATATTTCATCTAAGGTATTGCTTGGTCTTTCAGGAGTAATTCTTGTTATGCTCTCTGTCCTTGGATCTGTTGGAATTTTTAGTGCTCTTGGTGTAAAATCTACTCTGATCATCATGGAAGTTATCCCATTTCTTGTTCTAGCTGTAGGAGTGGATAATATGTGTATACTAGTTCATGCTGTGAAAAGGCAACAGCTAGATTTTCCTTTAGAAAGACGGATAAGCAATGCACTTGTGGAAGTAGGACCATCAATAACGTTGGCTAGTTTATCAGAGGTTTTAGCATTTGCTGCCGGAAGCTTTATTTCCATGCCTGCATGTCGTGTGTTCTCCATGTTTGCAGCATTGGCTGTACTTTTGGACTTTCTTTTGCAAGTTACTGCGTTCGTAGCTCTGATAGTTCTTGACTCGTTGAGGGCAGAGGATAAGAGGGTTGATTGTTTTCCATGCATTAAAGTGCACTCTGTGCATGCAGACCCTGATAAAGGCATTGGACAAAGGAAACCCGGTTTGTTGGCTCGATATATGAAGGAGGTTCATGCTCCCATTCTAAGTATTTGGATAGTAAAAATGGTTGTCATTGCAATTTTTGTGGCATTTGCATTGGCTAGCATTGCTTTGAGCACTAGAATTGAACCTGGATTAGAGCAGGAGATTGTTCTTCCCCGAGACTCATATCTTCAGGGGTATTTCAATAATGTTTCGGAATATCTCAGAATTGGGCCACCTTTGTATTTTGTTGTGAAGAACTATAACTACAGCTCAGAATCAACACATACAAATCAGCTTTGCTCCATAAGCCAATGCAATTCAGACTCTCTTTTAAACGAGGTTGCTAAAGCGGCCCTAGTACCAGGCACAAGCTATATTGCCAAGCCAGCTGCTTCTTGGCTAGATGATTTTCTTGTCTGGGTATCTCCAGAAGCATTTGGGTGCTGCAGGAAGTTCACTAATCAGAGCTATTGCCCTCCTGATGATCAGCCTCCTTGCTGTGCTCCTGAAGAAGGAGGCTCCTGTGTTTCAGCTGGAGTATGTAACGATTGCACAACGTGTTTCCGTCACTCCGATCTCCATAATGATCGTCCTTCCACAACACAATTTAGGGAGAAACTGCCGTGGTTTCTTAGTGCTCTTCCATCTGCTGACTGTGCAAAAGGTGGTCATGGGGCTTACACCAGCAGTGTTGAACTGAAAGGATATGACAGTGGCATTATTCAAGCATCATCATTCCGTACATATCATACCCCATTGAACAAGCAGGTTGACTATGTTAATTCCATGAGAGCTGCTCGAGAGTTCAGTTCAAGGGTTTCTGATTCTTTGAAGATTGAGATCTTCCCATATTCGGTGTTTTATATGTTTTTTGAGCAATACCTGAATATATGGAAAACTGCACTGGTCAACCTTGCAATAGCTATTGGTGCAGTATTTATCGTGTGCTTGGTTATCACATGCAGTTTATGGAGTTCAGCAATCATTTTGTTGGTGTTGACAATGATTGTTATTGATCTTATGGGTGTGATGGCCATTCTGAATATCCAATTGAATGCCATCTCAGTTGTCAACCTCGTTATGTCAGTGGGCATTGCTGTCGAGTTTTGTGTGCATATGACTCATTCTTTCACTGTTGCAAGTGGAGATAAAGATCAGCGTGTTAAGGAGGCTCTAGGTACAATGGGTGCTTCAGTCTTCAGTGGTATCACACTAACAAAGTTGGTTGGAGTTATTGTTCTTTGCTTCTCGAGAACAGAAGTTTTTGTGGTTTATTACTTTCAGATGTACTTGTCATTAGTACTTCTCGGTTTTTTGCACGGACTTGTTTTCTTGCCGGTGGTATTAAGCATGTTTGGTCCACCTTCAAGATGTATAATCACTGACCAAGGGGCAGATCGATCATCAACTTCTTCATAA 3888 0.4066 MELHRLGLLTFLSILQVWLILSLTEAEILSSRLLLASNDRTPRERHSKDYCSMYDICGKRSDGKVVNCPFGSPAVKPDDLLSSKIQSLCPTITGNVCCTEAQFETLRTQVQQVIPFLVGCPACLRNFLNLFCELTCSPDQSLFINVTSVDKVGGNLTVGGIDYFVSDTFGDGLYDSCKDVKFGTTNSKAIQFVGGGAQNVKEWFAFIGKKAPPNGLGSPYAITFPENAIKSSGMEPMNVSSYSCSDISLGCSCGDCPSSSVCSNSSSSTTQKKDSCSLKVGTLTVQCVDLTLTVLYIILICVFFGWGLYHRVRERKPVYRTKSVSNVTNGGMLYSHNQEKEENLPMHQIIEDVSQNRNEVRLSAVQGYMSNFYRKYGLYVARNPNVVLASSLAIVILLCVGLIRLKVETRPEKLWVGPGSKAAEEKQFFDSHLAPFYRIEQLILGTVPDDVNSTAPRIVSEDNIKFLFEVQKKVDAIRANHSGLMVSLKDICMKPLDTDCATQSILQYFKMDPDNFDNYGGVDHLSYCFEHYSSADQCMSAFKGPLDPSTVLGGFSGNDYSGASAFIITYPVNNAIDKEGNETAKAVAWEKAFIQLVKNELLPMAQSKNLTLAFSSECSIEEELKRESTADVITILVSYLVMFAYISLTLGDTPQLSSFYISSKVLLGLSGVILVMLSVLGSVGIFSALGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLDFPLERRISNALVEVGPSITLASLSEVLAFAAGSFISMPACRVFSMFAALAVLLDFLLQVTAFVALIVLDSLRAEDKRVDCFPCIKVHSVHADPDKGIGQRKPGLLARYMKEVHAPILSIWIVKMVVIAIFVAFALASIALSTRIEPGLEQEIVLPRDSYLQGYFNNVSEYLRIGPPLYFVVKNYNYSSESTHTNQLCSISQCNSDSLLNEVAKAALVPGTSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNQSYCPPDDQPPCCAPEEGGSCVSAGVCNDCTTCFRHSDLHNDRPSTTQFREKLPWFLSALPSADCAKGGHGAYTSSVELKGYDSGIIQASSFRTYHTPLNKQVDYVNSMRAAREFSSRVSDSLKIEIFPYSVFYMFFEQYLNIWKTALVNLAIAIGAVFIVCLVITCSLWSSAIILLVLTMIVIDLMGVMAILNIQLNAISVVNLVMSVGIAVEFCVHMTHSFTVASGDKDQRVKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLSLVLLGFLHGLVFLPVVLSMFGPPSRCIITDQGADRSSTSS 1295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04587 1295 FunFam Putative Patched sphingolipid transporter 1089 1279 - -
Vifa2g04587 1295 FunFam NPC intracellular cholesterol transporter 1 588 805 - -
Vifa2g04587 1295 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1085 1276 - -
Vifa2g04587 1295 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1083 1280 - -
Vifa2g04587 1295 Gene3D Multidrug efflux transporter AcrB transmembrane domain 591 803 - -
Vifa2g04587 1295 Pfam Niemann-Pick C1 N terminus 49 282 IPR032190 -
Vifa2g04587 1295 NCBIfam Niemann-Pick C type protein family 51 1276 IPR004765 GO:0005319|GO:0016020
Vifa2g04587 1295 ProSiteProfiles Sterol-sensing domain (SSD) profile. 631 794 IPR000731 -
Vifa2g04587 1295 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 35 1281 - -
Vifa2g04587 1295 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 589 794 - -
Vifa2g04587 1295 Pfam Patched family 1060 1275 IPR003392 GO:0016020
Vifa2g04587 1295 Pfam Patched family 452 910 IPR003392 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04587 Vifa-Chr2 1350962538 1350979272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04587 45 1295 Miscellaneous Gene Families AT1G42470 73.141 0.0 1858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04587 K12385 - gmx:100813262 2196.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04587 2 1350962538 1350979272 Vifa2g04587 2 1350962538 1350979272 ECH