Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04546 ATGGCCACAGTCACTTCCACCACCGTTGCTATTCCATCGTTCACAGGTCTTAAGGCAAACGCAGCCACCAAAGTTAGTGCCATGGCTAAAATTCCAACTTCATCTTCCCAATCACCAAGGCTTTGTGTCAGAGCTTCACTCAAGGACTTTGGAGTTGCTCTTGTTGCCACTGCTGCAAGTGCAGTGCTAGCTAGCAATGCCTTGGCTGTTGAAGTCTTGCTTGGTGCTAGTGATGGGGGTTTGGCTTTTGTTCCAAACAGTTTCGAAGTGTCTGCTGGAGACACGATTGTATTCAAGAACAATGCTGGTTTTCCTCACAACGTTGTCTTTGATGAAGACGAGATTCCTTCCGGGGTTGATGCAGCGAAAATTTCCATGCCTGAAGAAGATCTTCTCAACGCTCCTGGTGAGACTTACAGCGTTAAGTTGGATGCTAAGGGTACCTACAAATTCTACTGCTCACCTCACCAAGGAGCTGGTATGGTTGGACAAGTCACTGTTAATTAA 507 0.4675 MATVTSTTVAIPSFTGLKANAATKVSAMAKIPTSSSQSPRLCVRASLKDFGVALVATAASAVLASNALAVEVLLGASDGGLAFVPNSFEVSAGDTIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMPEEDLLNAPGETYSVKLDAKGTYKFYCSPHQGAGMVGQVTVN 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04546 168 NCBIfam plastocyanin 70 168 IPR002387 GO:0005507|GO:0009055
Vifa2g04546 168 ProSitePatterns Type-1 copper (blue) proteins signature. 147 161 IPR028871 -
Vifa2g04546 168 Pfam Copper binding proteins, plastocyanin/azurin family 71 168 IPR000923 GO:0005507|GO:0009055
Vifa2g04546 168 SUPERFAMILY Cupredoxins 67 168 IPR008972 -
Vifa2g04546 168 CDD Plastocyanin 70 168 IPR002387 GO:0005507|GO:0009055
Vifa2g04546 168 Gene3D - 70 168 IPR008972 -
Vifa2g04546 168 PANTHER PLASTOCYANIN MAJOR ISOFORM, CHLOROPLASTIC-RELATED 28 168 - -
Vifa2g04546 168 PRINTS Plastocyanin signature 98 116 IPR002387 GO:0005507|GO:0009055
Vifa2g04546 168 PRINTS Plastocyanin signature 147 166 IPR002387 GO:0005507|GO:0009055
Vifa2g04546 168 PRINTS Plastocyanin signature 75 94 IPR002387 GO:0005507|GO:0009055
Vifa2g04546 168 PRINTS Type I copper blue protein family signature 145 159 IPR001235 GO:0005507|GO:0009055
Vifa2g04546 168 PRINTS Type I copper blue protein family signature 104 119 IPR001235 GO:0005507|GO:0009055
Vifa2g04546 168 PRINTS Type I copper blue protein family signature 89 102 IPR001235 GO:0005507|GO:0009055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04546 K02638 - jre:109013946 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04546 2 1336659445 1336659951 Vifa2g04546 2 1336659445 1336659951 ECH