Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04540 ATGGCACTCATCAAATCAAGAACACACTCTCACTTACGCCACTCTTTTTTCCAGCACTTACACTACACTTTCAGACTCTGTTCTTCTTCACCTCTTCTTTCAAACGAGAATGACGCTACACAAAACACCAATTTATCACCCGAAGATTCCACCATAATCGAGAAATTTCACACCGTCATTAAAGACCACTACCGCAAAAACCCTAACCCTAACCCTAATCCCGTTTCACCCCCACACAATTTCACCATACCCGATCTCACCGTTGATTTCTCCAAAATCTCCACCGTCCATTCAATTTCCCCCTCCATCACCCGCCGTGTAATTGAAAAATGTGGAAGCGTCCGCCACGGTATCCCATTCCTCCAATCCCTAGCTTTCTTCAACTGGGCCACCACCCTAGAAAACTTCCCCTCCTCTCCGGAGCCCTACAACGAAATGGTCGATCTCGCCGGAAAGATCCGGCACTTCGATTTAGCATGGAATTTGATCGATTTGATGAAATCTCGTGGCGTCAAAATAACATTAAGCACGTTCTCTGTTCTCGTCCGACGATACGTGAGGGCTGGATTGGCTGCGGAGGCGGTGCACGCTTTTAACCGTATGGAAGACTATGGTTGTACTCCTGATAAGGTTTCGTTTTCTATTGTTATTAGTAGTTTATGTAAGAAGAGAAGAGCGAGTGAAGCGCAAACGTTTTTTGATAGTCTTAAGCATAAGTTTGAGCCTGATGTTATAGTTTATACTAGCTTAGTTCATGGTTGGTGTCGCGCTGGTGATATATCGAAAGCCGAGGAGGTTTTTAGTGATATGAAGGTGGCTGGTGTGAAGCCGAATGTTTATACTTACAGCATTGTGATTGATTCGCTTTGTCGGAGTGGACAAATCACTCGTGCTCATGATGTTTTCTCTGAGATGATAGATGCGGGATGTGATCCTAATGCTGTTACTTTTAATAGTCTTATGAGGGTTCATGTGAAAGCTGGTAGGACGGAGAAAGTTTTGCAGGTTTATAATCAAATGAAGAGACTCGGTTGTGCTGCGGATACAATTAGTTACAATTTCCTCATTGAGAGTCATTGTAAGGATGAGAATCTTGATGAAGCTGTGAAGGTTCTTGATACAATGGTTAAGAAAGGGGTTGCTCCTAATGCATCTACTTTCAATTCGATTTTCGGATGCATAGCTGAGTTGCATGATGTGAATGGCGCACATCGGATGTATGCTAAAATGAAGGAACTGAAATGCTTGCCTAATACGTTGACTTATAATATACTGATGAGAATGTTTGTTGACTCGAAATCTATTGATATGGTTTTGAAGTTGAAAAAGGACATGGATGAGAATCAAGTTGAACCTAATGTGAATACTTACAGGATTTTGATTATGATGTTTTGTGAAAAGGGGCACTGGAATAATGCATACAAGTTCATGAAGGAAATGGTTGAAGAAAAAAGCCTAAAGCCAAATCTGTTGATTTATGAAATGGTTCTGGAGCAGCTGCGGAAGGCTGGACAGCTCAAAAAGCATGAAGAGTTGGTGGAGAAGATGGTTTCTAGGGGATTCGTCGCTCCTCGTCCTTTGTAG 1584 0.4236 MALIKSRTHSHLRHSFFQHLHYTFRLCSSSPLLSNENDATQNTNLSPEDSTIIEKFHTVIKDHYRKNPNPNPNPVSPPHNFTIPDLTVDFSKISTVHSISPSITRRVIEKCGSVRHGIPFLQSLAFFNWATTLENFPSSPEPYNEMVDLAGKIRHFDLAWNLIDLMKSRGVKITLSTFSVLVRRYVRAGLAAEAVHAFNRMEDYGCTPDKVSFSIVISSLCKKRRASEAQTFFDSLKHKFEPDVIVYTSLVHGWCRAGDISKAEEVFSDMKVAGVKPNVYTYSIVIDSLCRSGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCLPNTLTYNILMRMFVDSKSIDMVLKLKKDMDENQVEPNVNTYRILIMMFCEKGHWNNAYKFMKEMVEEKSLKPNLLIYEMVLEQLRKAGQLKKHEELVEKMVSRGFVAPRPL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04540 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Vifa2g04540 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Vifa2g04540 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Vifa2g04540 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Vifa2g04540 527 Gene3D Tetratricopeptide repeat domain 104 231 IPR011990 GO:0005515
Vifa2g04540 527 Gene3D Tetratricopeptide repeat domain 309 397 IPR011990 GO:0005515
Vifa2g04540 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 488 IPR002885 -
Vifa2g04540 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Vifa2g04540 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Vifa2g04540 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Vifa2g04540 527 Pfam PPR repeat family 183 222 IPR002885 -
Vifa2g04540 527 Pfam PPR repeat family 348 392 IPR002885 -
Vifa2g04540 527 Pfam PPR repeat family 417 465 IPR002885 -
Vifa2g04540 527 Pfam PPR repeat family 242 291 IPR002885 -
Vifa2g04540 527 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 128 412 - -
Vifa2g04540 527 SUPERFAMILY TPR-like 212 484 IPR011990 GO:0005515
Vifa2g04540 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Vifa2g04540 527 Gene3D Tetratricopeptide repeat domain 398 524 IPR011990 GO:0005515
Vifa2g04540 527 Pfam PPR repeat 315 345 IPR002885 -
Vifa2g04540 527 Pfam PPR repeat 143 171 IPR002885 -
Vifa2g04540 527 Gene3D Tetratricopeptide repeat domain 235 308 IPR011990 GO:0005515
Vifa2g04540 527 NCBIfam pentatricopeptide repeat 456 489 IPR002885 -
Vifa2g04540 527 NCBIfam pentatricopeptide repeat 280 314 IPR002885 -
Vifa2g04540 527 NCBIfam pentatricopeptide repeat 386 419 IPR002885 -
Vifa2g04540 527 NCBIfam pentatricopeptide repeat 421 454 IPR002885 -
Vifa2g04540 527 NCBIfam pentatricopeptide repeat 350 384 IPR002885 -
Vifa2g04540 527 NCBIfam pentatricopeptide repeat 315 348 IPR002885 -
Vifa2g04540 527 NCBIfam pentatricopeptide repeat 245 279 IPR002885 -
Vifa2g04540 527 NCBIfam pentatricopeptide repeat 177 209 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04540 130 524 Glycosyltransferase AT1G05670 27.970 1.28e-53 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04540 - - gmx:100800850 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04540 2 1334338395 1334339978 Vifa2g04540 2 1334338395 1334339978 ECH