Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04534 ATGACTCAAGATCTCGAGATGAAAGACCGTTCAACTCCTTCCAACTCCGTTTCTCCACCCGTTCCATCAACTCTGCAGCATTTGAAGGAGATAGCGACTCTCATCGAAACCGGTTCTGTTATTACGTCGTTTCTTGATCATGTTCTTACTCCTGGCTCTGAATCTCATGCCAAATTGTCTGCGTATCTTCCCAAGGAGGATGATCATGAGATGGAGGTGGACGCCGCAACGTCTGCCATTCAAACCTCTACGACCAAACATTTGTTGCCCGAGCTTGAAATTTACTGTTACCTGCTTGTACTACTTTTTCTGATTGATCAGAAAAAATACAATGAGGCCAAAGCTTGTTCCTCAGCTAGTGTTGCTTGGCTGAAGAATGTGAACAGAAGAACTGTGGATGTTATTGCATCTAGACTATTTTTTTACTATTCATATAGCCATGAACTTACTGGAGATCTAGCTGAAATTAGGGGCAACCTCCTTGCATTGCATCGGATTGCCACTCTGCGCCATGATGAGTTGGGTCAGGAAACCCTTTTGAATTTATTACTTCGCAACTATCTTCACTACAACCTATTTGACCAGGCAGAGAAGCTGAGGTCAAAGGCTCCACGATTTGAAGCACATTCAAACCAGCAGTTTTGCCGTTATCTTTTCTACCTCGGGAAAATCCGGACTATTCAATTGGAGTATACAGATGCAAAAGAGTCTCTCCTGCAGGCTGCTCGTAAAGCTCCAGTTGCAGCTCGGGGTTTTCGAATTCAATGTAACAAGTGGGCTATCATAGTGCGTTTGCTGTTGGGAGAAATACCTGAACGAACTGTCTTTATGCAGAAGGGAATGGAGAAAGCGCTAAGGCCTTATTTTGAGCTTACAAATGCTGTCCGTATTGGAGACTTGGAGCTGTTTAAGAACATTGCAGATAAGTTTGCAACTACCTTCAGTGCAGACGGAACCCATAATTTGATTGTTCGCCTGCGGCATAATGTCATCAGGACAGGTTTACGTAACATCAGCATCTCATATTCTCGCATCTCACTAGTTGATGTTGCTAAAAAATTGAGGTTGGACTCACCAAATCCTGTTGCTGATGCTGAGAGTATTGTATCAAAGGCTATTCGTGACGGGGCAATTGATGCTACATTGGACCATTCAAGTGGGTGGATGGTATCCAAGGAAACTGGAGATATTTACTCCACAAATGAGCCCCAGCAGGCTTTTAATTCTCGGATTGCCTTCTGTCTTAACATGCACAATGAAGCTGTTAGAGCACTTCGTTTTCCACCAAACACACACAAAGAAAAAGAAAGTGCTGAAAAGAGAAGAGAGAGACAACAGCAAGAGCAAGAACTGGCCAAGCATATTGCAGAGGAGGATGACGATGATTTTTGA 1392 0.4353 MTQDLEMKDRSTPSNSVSPPVPSTLQHLKEIATLIETGSVITSFLDHVLTPGSESHAKLSAYLPKEDDHEMEVDAATSAIQTSTTKHLLPELEIYCYLLVLLFLIDQKKYNEAKACSSASVAWLKNVNRRTVDVIASRLFFYYSYSHELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLFDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKNIADKFATTFSADGTHNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSPNPVADAESIVSKAIRDGAIDATLDHSSGWMVSKETGDIYSTNEPQQAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04534 463 SMART PCI/PINT associated module 150 321 - -
Vifa2g04534 463 ProSiteProfiles PCI domain profile. 215 396 IPR000717 -
Vifa2g04534 463 Coils Coil 430 457 - -
Vifa2g04534 463 SUPERFAMILY "Winged helix" DNA-binding domain 322 397 IPR036390 -
Vifa2g04534 463 MobiDBLite consensus disorder prediction 1 22 - -
Vifa2g04534 463 MobiDBLite consensus disorder prediction 427 463 - -
Vifa2g04534 463 Pfam Proteasome regulatory subunit C-terminal 396 462 IPR013586 GO:0000502|GO:0030234|GO:0042176
Vifa2g04534 463 Pfam PCI domain 287 392 IPR000717 -
Vifa2g04534 463 Gene3D - 94 419 - -
Vifa2g04534 463 FunFam 26S proteasome non-ATPase regulatory subunit 3 96 419 - -
Vifa2g04534 463 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 14 454 - -
Vifa2g04534 463 MobiDBLite consensus disorder prediction 427 456 - -
Vifa2g04534 463 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 321 414 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04534 Vifa-Chr2 1333011282 1333015095 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04534 K03033 - gmx:100814379 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04534 2 1333011282 1333015095 Vifa2g04534 2 1333011282 1333015095 ECH