Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04530 ATGTCTTCTCCTCCTCCTCCTCCTGATTCGTCTTCTACTGCTAACCCTGCCGCCAACTTCCCGCGAAATAACCTAACCTCTCCCTGGGCGCAGATTGTTCGTGGCGCTGATTCCGATTCAGTCGAAAACAAATCGCCGCCGGAGTCGTCTTCGACGTCGTCTCTCGATTCCGTTGCTCCTCCTGTTGTTGCTGCCGGTGAAAGCTCTAATGCTGATAAGGAGAGCAATGCGGTTAACCCTAGGAGATCTGCTTGGAATAATCTTCCCAATGGTGCTGTTGCTGAGGTGAGTCCGGTTATGGGTGCGGTGTCTTGGCCTGCTTTGTCGGCTAATTCTGCGAAATTGGCATCTGATGCCTCATCCTCTGCTGAGGGATCAACCTCCGTTCCTCAGGGACCTGTTACATTGAACAACCCTCGAGAACAAGCCGTTGCTAATGGGAGTGTGGAACCTACTCCTCCGGTGAATCATGGTGGGGCTAATAGACAACAGATGAGGCGCGGAGCAGGCAACAGCAGTAGCAACATTACCAATGGGCCTGGTTCTTTTCCGAACAGCTTCTCCAACCCACCCCCTCAGGTTGATCTTCGACCACAGGCTCCTCCTCCGCCATATCCTGTGATTCAGATCCCTCCGAATACAACCTTTGTCAACGGGGTTCCGCCTTACCGGAACAACAATGGCTGGGGTCCAAGAGGACCCGTTGGGGCTTATGGGGTGTCGGTGGATGAGCACAGGAACCCTAATCGTAGGGGTAATTATGGGAACCGTCCTCATAACAACAACATTAGGCGCAATCAGGATTCCGGAAATATAAACACTAGAGATGTTCATGGACATCAACATAGGATGCAGTCTGGGAGATTTTCAAGGCCCACAGGACCTAACTCTGCTACGTTTTTAGGGTCTCAGCCTATAAGACCCTATGTAAACCCTACTGGGTTCCCTGAATACTATTATTATCCAACAGTTCAACTCGAACCCTTCGGAGGTGTGCCATTTTTGACTCATCCACCTCCTCCAGCTGTGTTTGTCCCAGTTCCAGAGAATCCTCTGACCCTTGCAATAGTCAAGCAAATTGACTATTACTTTAGCGATGTTAATTTAGCGAAGAAAGACGACTATCTGCAGCTCAACATGGACGAACAGGGCTGGGTTCCAATTAGTGTGATTGCAAACTTCCCTCGAGTTAAAAGTTTGACCAGTAACGTTGAGTTGATTTTGGATTCATTGAGAACTTCGTCAATCGTGGAAGTGCATGGTGACAAGCTGAGGAGGCGTAATGACTGGATGAGGTGGCTGCCCTCTGTTCACCAAAGGGCTAGTTCTGGTTCTGTATCCCAAGTGGATCAAATTGCAATCACATAG 1368 0.4963 MSSPPPPPDSSSTANPAANFPRNNLTSPWAQIVRGADSDSVENKSPPESSSTSSLDSVAPPVVAAGESSNADKESNAVNPRRSAWNNLPNGAVAEVSPVMGAVSWPALSANSAKLASDASSSAEGSTSVPQGPVTLNNPREQAVANGSVEPTPPVNHGGANRQQMRRGAGNSSSNITNGPGSFPNSFSNPPPQVDLRPQAPPPPYPVIQIPPNTTFVNGVPPYRNNNGWGPRGPVGAYGVSVDEHRNPNRRGNYGNRPHNNNIRRNQDSGNINTRDVHGHQHRMQSGRFSRPTGPNSATFLGSQPIRPYVNPTGFPEYYYYPTVQLEPFGGVPFLTHPPPPAVFVPVPENPLTLAIVKQIDYYFSDVNLAKKDDYLQLNMDEQGWVPISVIANFPRVKSLTSNVELILDSLRTSSIVEVHGDKLRRRNDWMRWLPSVHQRASSGSVSQVDQIAIT 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04530 455 MobiDBLite consensus disorder prediction 249 272 - -
Vifa2g04530 455 MobiDBLite consensus disorder prediction 165 193 - -
Vifa2g04530 455 MobiDBLite consensus disorder prediction 111 204 - -
Vifa2g04530 455 MobiDBLite consensus disorder prediction 111 145 - -
Vifa2g04530 455 MobiDBLite consensus disorder prediction 42 58 - -
Vifa2g04530 455 PRINTS Lupus La protein signature 384 399 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vifa2g04530 455 PRINTS Lupus La protein signature 359 376 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vifa2g04530 455 PRINTS Lupus La protein signature 415 428 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vifa2g04530 455 Gene3D - 346 435 IPR036388 -
Vifa2g04530 455 MobiDBLite consensus disorder prediction 253 272 - -
Vifa2g04530 455 CDD LAM 355 427 - -
Vifa2g04530 455 MobiDBLite consensus disorder prediction 13 33 - -
Vifa2g04530 455 SMART la 350 429 IPR006630 -
Vifa2g04530 455 Pfam La domain 356 412 IPR006630 -
Vifa2g04530 455 ProSiteProfiles La-type HTH domain profile. 346 436 IPR006630 -
Vifa2g04530 455 MobiDBLite consensus disorder prediction 69 86 - -
Vifa2g04530 455 MobiDBLite consensus disorder prediction 1 89 - -
Vifa2g04530 455 SUPERFAMILY "Winged helix" DNA-binding domain 343 437 IPR036390 -
Vifa2g04530 455 PANTHER LUPUS LA PROTEIN-RELATED 102 434 IPR045180 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04530 Vifa-Chr2 1332608951 1332611360 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04530 K18757 - gmx:100775279 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04530 2 1332608951 1332611360 Vifa2g04530 2 1332608951 1332611360 ECH