Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04507 ATGGATCAATTAAGTACAAAATCATTTTTATTTTTTCTCACACTTAACCTTTCATCATCACTAGTAATTTCAACAACCTTCATATTTGTTAACAAATGCAACTACACAGTATGGCCAGGACTTCTTTCCAACGCCGGGATTGCTCCTCTTCCAACCACCGGTTTCGTTCTCCAATCCGGCGATTCCAAATCAATCACTCCACCGGCCTCCTGGGGAGGCCGTTTCTGGGGACGCACACTCTGTTCCCAAGACTCCACCGGAAAATTCACCTGCCTCACCGGTGACTGCAACTCCGGGAAACTCGAATGCTCCGGCAACGGCGCCACACCTCCTGCTACCTTAGCGGAGTTCACTCTTAACGGATCCGGTGGACTCGATTTCTTCGATGTCAGTTTAGTCGACGGTTACAACGTGCCTATGTTGGTTGTTCCACAAGGTGGCTCGGGTGATAACTGTACCAGTACTGGATGCATCGTTGATTTACTCGGCGCGTGTCCTTCAGAGCTTAAGCTTACGAGCGTGGACGGGAAAGAGAATTTAGCGTGTAAAAGTGCGTGTGAGGCGTTTGGATCGGCGCAGTATTGTTGCAGCGGCGCGTATGGTTCGCCTAACACTTGCAAGCCTTCGAGTTATTCTCAGATTTTTAAAAACGCTTGCCCACGCGCGTATAGCTACGCATATGATGATAAGACTAGCACGTTTACATGTGCTTCTGCTGCTGAATACATAATCACGTTTTGCCCTTCTGCTAATAGCAAGTACCCCAGTCAAAAATCGTGGCAGGGACAAAATCCAAAATCCGATGGCAGTGACTCATCACCGGAGCTTAACAACGGTTCAATGGTGTATGTTGGTGCGGGGGCCTATGATCAGAGTGAAATATCATGCTCCACTTGTATCCATATATGGGAATATAAAATCATACTCACTATCACAATGGCCATGTGGTTCTTGTGTCACATTTTTCACTTCTAA 975 0.4697 MDQLSTKSFLFFLTLNLSSSLVISTTFIFVNKCNYTVWPGLLSNAGIAPLPTTGFVLQSGDSKSITPPASWGGRFWGRTLCSQDSTGKFTCLTGDCNSGKLECSGNGATPPATLAEFTLNGSGGLDFFDVSLVDGYNVPMLVVPQGGSGDNCTSTGCIVDLLGACPSELKLTSVDGKENLACKSACEAFGSAQYCCSGAYGSPNTCKPSSYSQIFKNACPRAYSYAYDDKTSTFTCASAAEYIITFCPSANSKYPSQKSWQGQNPKSDGSDSSPELNNGSMVYVGAGAYDQSEISCSTCIHIWEYKIILTITMAMWFLCHIFHF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04507 324 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Vifa2g04507 324 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Vifa2g04507 324 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Vifa2g04507 324 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Vifa2g04507 324 CDD TLP-PA 26 247 - -
Vifa2g04507 324 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Vifa2g04507 324 FunFam THAUMATIN-LIKE PROTEIN 1 25 248 - -
Vifa2g04507 324 SUPERFAMILY Osmotin, thaumatin-like protein 25 249 IPR037176 -
Vifa2g04507 324 Pfam Thaumatin family 31 248 IPR001938 -
Vifa2g04507 324 ProSiteProfiles Thaumatin family profile. 24 248 IPR001938 -
Vifa2g04507 324 PANTHER OS03G0233200 PROTEIN 18 248 IPR001938 -
Vifa2g04507 324 SMART tha2 27 248 IPR001938 -
Vifa2g04507 324 Gene3D Thaumatin 25 248 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04507 Vifa-Chr2 1326595452 1326596696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04507 8 267 Receptor kinase-like Gene Family AT5G38280 51.136 6.65e-90 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04507 - - gmx:100780102 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04507 2 1326595452 1326596696 Vifa2g04507 2 1326595452 1326596696 ECH