Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04499 ATGAAGGTAACCAAGCGACCGATCTACGCCTTCACTAAATGGCTCCGCCGGCAACCGCCCAAAATGAAGCTATTTCTGGCCATTCTCTCCGGACTCATAGCTCTTCTTTTTCTTCGCATGGTTGTTCACGACCACGACAGCCTCTTCGTAGCGGCTGAGCTTGTGCATGCATTAGGAATTTGCCTCCTCATTTATAAACTCGCTCAGGAAAAAACATGCGCCGGACTCTCGCTTAAATCACAGGAACTCACAGCTATATTTCTAGCTGTTAGACTATACTGCAGTTTTGTCATGGAGTACGATATACACACCTTACTCGATACTGCAACATTGGGGACGACCCTCTGGGTTATTTATATGATACGTTTCAAACTGAAATCCAGTTATAATGATGATAAGGACAACCTTGCAATATACTATGTGGTGATACCTTGTGCTGTACTGTCTTTACTCGTTCATCCAACAACCCAGCATCATACTGTTAACAGGATTTTCTGGGCTTTTTGTGTTTATCTTGAAGCTGTGTCAGTTCTACCTCAATTGCGAGCCATGCAAAACACCAAGATTGTTGAACCATTCACAGCACACTATGTTTTTGCCCTTGGAGTTGCAAGGTTTTTGAGTTGTGCACATTGGGTCCTCCAGGTATTAGATACTCGCGGTAAACTTCTAACTGCTTTGGGTTATGGATTGTGGCCTTCTATGGTGCTTGTATCAGAAATTGTCCAAACCTTCATCCTGGCAGATTTTTGCTACTACTACATCAAGAGCCTTGTTGGGGGACAACTCATTGTTCGGCTTCCTTCTGGAGTTGTGTAA 819 0.4383 MKVTKRPIYAFTKWLRRQPPKMKLFLAILSGLIALLFLRMVVHDHDSLFVAAELVHALGICLLIYKLAQEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHTLLDTATLGTTLWVIYMIRFKLKSSYNDDKDNLAIYYVVIPCAVLSLLVHPTTQHHTVNRIFWAFCVYLEAVSVLPQLRAMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTRGKLLTALGYGLWPSMVLVSEIVQTFILADFCYYYIKSLVGGQLIVRLPSGVV 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04499 272 Pfam ER lumen protein retaining receptor 72 214 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vifa2g04499 272 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 48 269 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vifa2g04499 272 PRINTS ER lumen protein retaining receptor signature 75 95 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vifa2g04499 272 PRINTS ER lumen protein retaining receptor signature 202 220 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vifa2g04499 272 PRINTS ER lumen protein retaining receptor signature 188 202 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vifa2g04499 272 PRINTS ER lumen protein retaining receptor signature 166 186 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vifa2g04499 272 PRINTS ER lumen protein retaining receptor signature 48 67 IPR000133 GO:0006621|GO:0016020|GO:0046923
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04499 Vifa-Chr2 1324569944 1324573866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04499 4 272 Miscellaneous Gene Families AT4G38790 77.323 1.30e-163 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04499 - K10949 gmx:100787747 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04499 2 1324569944 1324573866 Vifa2g04499 2 1324569944 1324573866 ECH