Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04478 ATGTCTGCTTCCGAAGGTGAGAAGAAGGTTGTGGAAGAGAACGAAGTTCCGAAAGGCGGAGAGCTTTTGTTCTGTGGTGCCACGTGTTGGGATATCGTTGGTCGGAAGAAAGGGCCGGCTGAAGGGAACTTGGTCTCTCCGTCAAGGCTAAGGCCTCTCGTTGGGATTGATATTCGTTACGTTGCTTCTGGTTGCGCGTCTTGTCATTGTTTGGCATTGGATGTTGAAGGGCGGTGCTATACATGGGGACGTAATGAGAAAGGGCAACTGGGTCATGGAGATACTATTCAGCGTGATAGGCCAACTGTGGTGTCTGGACTTTCAAAATACAAAATTGTTCAAGCTGGAACTGGGAAGAGCCATACAGTGGTTGTTACAGATGATGGAAATTCTCTAGCATTTGGATGGAACAAACATGGACAGCTAGGTTCGGGTTCTACGAAAAATGAAATTGAATCATCTCCCATTCGCTGTGTCGTTTCTGAAGTTAAATATGCTACATGTGGTAGCGACTTTTCTGTCTGGTTGTCTTCAGTTGAAGGAGCTTCTATACTGACTGCTGGGCTTCCACAGTATGGGCAGCTTGGGCACGGAACAGATAATGAGTATAATTCCAAAGAAAGCTCTGTGAAATTAGTTTACGAACCACAGCCACGACCTCGAGCCATAGCTTCCCTGGCTGGTGAAACTGTTGTCAAGGTGGCATGTGGATCAAATCACACAGTGGCGGTGGATAAGAATGGGTTTGTCTACACGTGGGGTTATGGTGGTTATGGAAGGCTTGGTCACAGGGAGCAGAAGGATGAATTTGCTCCACGTCGTATTGACATTTTCACAAATAGAAACGTTTTACCTCCTGAAGCAATTATTTCAGCAGGTTCTTTGAGTTCTGCTTGTACTGCAGCTGGAGGGCAGTTGTACATGTGGGGCAAACTAAAGAACACTGGTGATGACTGGATGTACCCGAAGCCTCTAATGGACTTAAGTGGTTGGAATATACGATGCATGGATTCTGGGGGTATGCACCATTTTGTCGGGGCTGATTCCTCATGCATAAGTTGGGGTCAGGCTCAGAATGGAGAGCTGGGATACGGCCCTACTGGACAAAAGTCTTCAGCTGTACCCAAAAAGGTGGATTTACTTGAGGGTATGCATGTAATGAGTGTTGCTTGTGGTTTGGGTCACTCCATGGTTGTGGTTGACAGAGCAAATATTGCTGAAAGACTTGACCAGCTTGATACACATGACGGCAAAGCTGTTGGTGAAGAAGGTACTGAGCCTGTGAACAAAACTCCAGTCCCTAAGAAGGCTGCTGCTCCTAAAAAGGGTGCAAAGAAAGCTGACAACTCAAAGAAGAGGAAAACAGCAAAAGATTCATCTGACTCGGAAGAAGAGCAAGAACAGGCTGAAGAAAGTGACTATAGCGATGATGAAGTTAATGGTGAGGCTGAGGTTAAGAAATCACGTGGTGGAAAAAATTCTGGCAAGGGTCGAGGAAAGGCATCCAAAATGTCTGAGCCTGAGAGCAAAGGTTCTGGCAAAGGGCGCGGTCGCGCTCCTGCAAATAAAAACAGTTCTAAATCTACTCCGGTGAAGTCATCTGCTGGTAAGAGAGGAAGACCCAAAAAGGCATGA 1635 0.4654 MSASEGEKKVVEENEVPKGGELLFCGATCWDIVGRKKGPAEGNLVSPSRLRPLVGIDIRYVASGCASCHCLALDVEGRCYTWGRNEKGQLGHGDTIQRDRPTVVSGLSKYKIVQAGTGKSHTVVVTDDGNSLAFGWNKHGQLGSGSTKNEIESSPIRCVVSEVKYATCGSDFSVWLSSVEGASILTAGLPQYGQLGHGTDNEYNSKESSVKLVYEPQPRPRAIASLAGETVVKVACGSNHTVAVDKNGFVYTWGYGGYGRLGHREQKDEFAPRRIDIFTNRNVLPPEAIISAGSLSSACTAAGGQLYMWGKLKNTGDDWMYPKPLMDLSGWNIRCMDSGGMHHFVGADSSCISWGQAQNGELGYGPTGQKSSAVPKKVDLLEGMHVMSVACGLGHSMVVVDRANIAERLDQLDTHDGKAVGEEGTEPVNKTPVPKKAAAPKKGAKKADNSKKRKTAKDSSDSEEEQEQAEESDYSDDEVNGEAEVKKSRGGKNSGKGRGKASKMSEPESKGSGKGRGRAPANKNSSKSTPVKSSAGKRGRPKKA 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04478 544 SUPERFAMILY RCC1/BLIP-II 18 402 IPR009091 -
Vifa2g04478 544 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 234 244 IPR000408 -
Vifa2g04478 544 Gene3D - 9 157 IPR009091 -
Vifa2g04478 544 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 402 IPR000408 -
Vifa2g04478 544 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 77 128 IPR000408 -
Vifa2g04478 544 Gene3D - 161 420 IPR009091 -
Vifa2g04478 544 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 303 IPR000408 -
Vifa2g04478 544 MobiDBLite consensus disorder prediction 519 533 - -
Vifa2g04478 544 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 129 179 IPR000408 -
Vifa2g04478 544 MobiDBLite consensus disorder prediction 499 513 - -
Vifa2g04478 544 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 115 125 IPR000408 -
Vifa2g04478 544 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 247 IPR000408 -
Vifa2g04478 544 MobiDBLite consensus disorder prediction 441 462 - -
Vifa2g04478 544 MobiDBLite consensus disorder prediction 414 544 - -
Vifa2g04478 544 PRINTS Chromosome condensation regulator RCC1 signature 78 94 IPR000408 -
Vifa2g04478 544 PRINTS Chromosome condensation regulator RCC1 signature 131 147 IPR000408 -
Vifa2g04478 544 PRINTS Chromosome condensation regulator RCC1 signature 112 125 IPR000408 -
Vifa2g04478 544 PRINTS Chromosome condensation regulator RCC1 signature 234 250 IPR000408 -
Vifa2g04478 544 PRINTS Chromosome condensation regulator RCC1 signature 250 264 IPR000408 -
Vifa2g04478 544 MobiDBLite consensus disorder prediction 463 478 - -
Vifa2g04478 544 Pfam Regulator of chromosome condensation (RCC1) repeat 76 125 IPR000408 -
Vifa2g04478 544 Pfam Regulator of chromosome condensation (RCC1) repeat 185 244 IPR000408 -
Vifa2g04478 544 Pfam Regulator of chromosome condensation (RCC1) repeat 128 174 IPR000408 -
Vifa2g04478 544 Pfam Regulator of chromosome condensation (RCC1) repeat 247 288 IPR000408 -
Vifa2g04478 544 Pfam Regulator of chromosome condensation (RCC1) repeat 353 399 IPR000408 -
Vifa2g04478 544 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 389 399 IPR000408 -
Vifa2g04478 544 PANTHER PROTEIN RCC2 9 518 IPR028641 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04478 Vifa-Chr2 1316027444 1316033095 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04478 - - pvu:PHAVU_009G015100g 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04478 2 1316027444 1316033095 Vifa2g04478 2 1316027444 1316033095 ECH