Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04477 ATGAGTAAACGACCACCACCTGATCCTGTGGCAGTTCTTCGAGGCCATCGCGCTTCAGTCACCGATATTGCTTTTCATCCCTATAAGCCTATATTATTCTCCGGTTCTGCTGACGGTGAAGTTCGAATTTGGGATACATTTCGACGCCAAACTGTTTCATCAGCATGGTTACACAGTGCCGCACATGGGATTGTTGCTGTTGCCAGTAGTTCTTCACTTGGAACCAATAAATTTGTTAGCCAGGGTAGGGATGGAACTGTGAAAGTTTGGGATTTTGATAACTCTGGTTTGTCTAGAATTCCATCAGTTACAATCAAGACAAACAGTTACCACTTTTGTAAGTTTTCCCTAGTTAAGAATCATTGTACTTGGTTAAAAGAAGGGGACGCATCAAAAGATTGTCTTGAAACAAAAGAGGCTCATACTAATCAAAGTTGTTCTGAAAGCTCTGAAGGGCTATCGTACGTGGCTTTGTCGGGGGAGAACTCTTCTGAGGTTGAAATTTGGGATCTCAAGTCAGCTGAGAGATTTGCACGACTCCCTTCAAATATTGGTAGTAACTCTTCGAGTGTTAGCAACAAAGGGATGTGCATGGCACTTCAATTGTTAGTACCATCTGAATCACAAGGATTTTTGAATGTCATAGCTGGATATGAAGATGGTTCCATGCTTTGGTGGGATGTACGGAATCCTGGAGTTCCAATAAGTTCTGTGAAATTCCATTCTGAGCCAGTTCTGAGCATCTGCATTGACGGGTCTTGCAAAGGGGGTATCTCAGGAGCTGCAGATGAGAGGATTGTGATGTATAGCTTGGATCATTCTTCGGGTACATGTGTGGTCAATAAAGAAATCAAATTGGAGCGACCTGGCATCTCAGGCACCTCAATTCGGCCCGATAACAAAATTGCCGCAACAGCTGGCTGGGACCACAGAGTAAGGATATATAATTACCGCAAAGGAAATGCTTTAGCTGTTCTTAAGTACCATCATGCCACGTGCAATGCTGTAACTTTTTCGTCTGATTGTAAGCTTATGGCCTCTGCATCGGCTGACACAACGGTGGCACTATGGCAATTGTATCCTCCTCGAACATGA 1095 0.4374 MSKRPPPDPVAVLRGHRASVTDIAFHPYKPILFSGSADGEVRIWDTFRRQTVSSAWLHSAAHGIVAVASSSSLGTNKFVSQGRDGTVKVWDFDNSGLSRIPSVTIKTNSYHFCKFSLVKNHCTWLKEGDASKDCLETKEAHTNQSCSESSEGLSYVALSGENSSEVEIWDLKSAERFARLPSNIGSNSSSVSNKGMCMALQLLVPSESQGFLNVIAGYEDGSMLWWDVRNPGVPISSVKFHSEPVLSICIDGSCKGGISGAADERIVMYSLDHSSGTCVVNKEIKLERPGISGTSIRPDNKIAATAGWDHRVRIYNYRKGNALAVLKYHHATCNAVTFSSDCKLMASASADTTVALWQLYPPRT 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04477 364 Pfam WD domain, G-beta repeat 323 357 IPR001680 GO:0005515
Vifa2g04477 364 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Vifa2g04477 364 SUPERFAMILY WD40 repeat-like 4 358 IPR036322 GO:0005515
Vifa2g04477 364 SMART WD40_4 6 45 IPR001680 GO:0005515
Vifa2g04477 364 SMART WD40_4 277 316 IPR001680 GO:0005515
Vifa2g04477 364 SMART WD40_4 319 358 IPR001680 GO:0005515
Vifa2g04477 364 SMART WD40_4 50 91 IPR001680 GO:0005515
Vifa2g04477 364 SMART WD40_4 131 170 IPR001680 GO:0005515
Vifa2g04477 364 SMART WD40_4 231 270 IPR001680 GO:0005515
Vifa2g04477 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 364 IPR001680 GO:0005515
Vifa2g04477 364 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Vifa2g04477 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Vifa2g04477 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 78 100 IPR001680 GO:0005515
Vifa2g04477 364 Gene3D - 206 361 IPR015943 GO:0005515
Vifa2g04477 364 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Vifa2g04477 364 PRINTS G protein beta WD-40 repeat signature 345 359 IPR020472 -
Vifa2g04477 364 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Vifa2g04477 364 PANTHER TRANSDUCIN BETA-LIKE 3 4 359 - -
Vifa2g04477 364 Gene3D - 6 201 IPR015943 GO:0005515
Vifa2g04477 364 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 326 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04477 Vifa-Chr2 1315645860 1315657742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04477 10 92 Miscellaneous Gene Families AT5G08390 30.120 8.74e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04477 K24770 - gmx:100800482 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04477 2 1315645860 1315657742 Vifa2g04477 2 1315645860 1315657742 ECH