Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04471 ATGGGAGCGTGTGCTACATTTTCTCCGTGGACTCATGAAGACGATCTTTTACTCAAGAACTCCGTTGAGAGTGGTGCTTCGTTGGAGGCACTTGCGAAAGGTGCGGTGCAGTTTTCTCGAAAATATAGTATTGGGGAAATAAAAGAGAGATGGCATTCTATCTTCTTTGACGCTGTTGTATCCTCGGAAGCCTCTGCGGCTATGGTACGTTTAAAAGAACAGGATATTGTTTCTGTTAAGAGAAAACCTGTCAGGGCTCGAGATTCTTACTATGCTATGCGTAAAAGAATGCGGAAAGAGGTACAAACTTCGACGGACTACAATTTTCTTGTTGAACCAGTAAATGAGGATTATGTGGTAAATGGAGATCAGACCTTGCCTCTAAACTGTGTACCCGAGGGTTCAAATTGGAATCAATTTCCAAATAATGATCCGGCAAACTATGGTCTTCCGGAAAATATTATGGATGCTGATGTTGCAATTAATGGAGTTACTGATCAAGCGTTTTACACCGGGTTGGATGATACACTTGGAGAGAATTTCCTCATTGGCCAAAACCATATGCCCGTGGAGGAGCATCAAATTATTGAAGATAATGTGCCTCTGAATGGAGCTGCCGAGGAAATGGGTGTTCCGATAGAATTAGATATTGAGAGATTTATCAGAGATGAGGATGTAGAGGAAATATCTTTGTCTTCATTTCAACAAATCAACAATGAACCTGCAAATTTGTGCTCCGAGTTTGATGAAGATTATCTATTTGATTCATCTGAGTTAGAGTGTGGAGATTCATTTGACGATTTACAGTTATCTTCACTTCCTGACATTCCGGACATTCCGGATTGGAGAACAGAAGAACATGGCGGTATTTCATGTCACGGCTCAAAAGATTCGACTGCTTGTGAGAATGGTTACCTGAAAGAATTGTCCAATGATCTCTTAACCTTCACTGGCGAGGAAGAGCTATATCTGATGGATTATGTCGGAAAAGATGGGATTGGTAAATCTTATTATGATGGTCTCAGTTCACTTTTAGTAAACTCTCCAATTGACGGCTCTTCTGATCAGATACCTGAAGCAGATGGAGCAGAGTTATTACCAGATGGAGCAGAGTTATTACCACCTGAAGAAGTTAAAAATCTGTGTGTTTCACGTCGCACACACATAAATGACAACGCAGGAACAGCTGAAACAGATTTGTTAGCCGCCTTTGATGCACATGTTAATGATCTGTCAGCTTCATGTCGTGCTCGTGCAGAAGCATTAGCAGATGACAAATCAGAGTTCGAAATGCCAACTTCTGCCTCAGCTAAAGGCCCTCGATTTCCTGAAATAGTTCATGGAGTTATTACCTGTAAAACAAATACTGAGGACCCAGAAATTCCATCCAATGATGATGTTTCTCTACCCTTTTACGAGCCTCCCCCAACAAATTTTTGTTCATCCGAACCAGCTGTTTCAAAATCCAATAAACCAGTTCCATCATCTGTTAATGATTGTGGATTTAGAGCTAGCAGAAGAGGTAAAGTTTTGATGCAGGTTGAACAAAAAAACTCCATAGGAGCTCATGTGTCTTCCCAGACAACAGGAACCCGAGTGAATTCAGGGCCTGTTTCTGGTTCTAAAATAAAATACGAGTTATCTAATAACCATTCATCGCACACACTGTCTAGGAGTGCAGCTATTGCTTCCAGTGGCTTAGGTGGAGGCAACAGTTTAACAAACAAAACTCATGCTGCTCTTCATACAAATCCTAAGGAAAAGCTTGTCAATCCTAGCTTTGTAAAGCTAAGCAGTAACGTGACAAGTTTGTCACATGAAAAACCAGCCCTTGGAAACCGCTTCATAGATCAAGTCCAACCTAACGGTTCATGCTTGAAACAGAAACCACATGTAGCTTTGCCAGTTGAAGATAATAATCTGCAACATGCTGAAATGGGATCTACAGAAGTTCTAAGGTCAGAGCTGGGGGTTAATCCTGAAAAGTTTGATGAGGAAGAGCAATATATCGAAAGTGATGATGATATTCCTTATTATTCTGATATAGAGGCGATGATACTTGATATGGACTTGGAACCTGATGTTCAGGATTTATATGAGAATGAAGAAGTATCAAGATATCAGCACGAGGAAACTAAGCGGACTATCATAAGGCTGGAGCAGGGTGTTCACTCTTTCACGCAAAGAGCCATGGCTTCACACAGAGCACTGGCTCTATTACATGGCCGCCACTCAAATTACTACATCAAGAAACCCGAGGTTTTACTTGGACGAGCAACAGAAGGTGTTCATGTAGATATTGACTTAGGCAAAGGAGGTGGTACCAATCTAATATCTAGACGCCAGGCAATCATTAAGATGGATAAAGATGGATTGTTCTACATTAAAAATATTGGCAAGAGTTCAATGTTGGTAAATAACAGAGAGTTGCACACTGATCAATCTCAAAGACTGCTTTCCCATCATCTGATTGAGTTGAAGGGCATGCAATTGATATTCGAGATAAATCAAAGTTGTATGAAGCAGTAG 2529 0.4085 MGACATFSPWTHEDDLLLKNSVESGASLEALAKGAVQFSRKYSIGEIKERWHSIFFDAVVSSEASAAMVRLKEQDIVSVKRKPVRARDSYYAMRKRMRKEVQTSTDYNFLVEPVNEDYVVNGDQTLPLNCVPEGSNWNQFPNNDPANYGLPENIMDADVAINGVTDQAFYTGLDDTLGENFLIGQNHMPVEEHQIIEDNVPLNGAAEEMGVPIELDIERFIRDEDVEEISLSSFQQINNEPANLCSEFDEDYLFDSSELECGDSFDDLQLSSLPDIPDIPDWRTEEHGGISCHGSKDSTACENGYLKELSNDLLTFTGEEELYLMDYVGKDGIGKSYYDGLSSLLVNSPIDGSSDQIPEADGAELLPDGAELLPPEEVKNLCVSRRTHINDNAGTAETDLLAAFDAHVNDLSASCRARAEALADDKSEFEMPTSASAKGPRFPEIVHGVITCKTNTEDPEIPSNDDVSLPFYEPPPTNFCSSEPAVSKSNKPVPSSVNDCGFRASRRGKVLMQVEQKNSIGAHVSSQTTGTRVNSGPVSGSKIKYELSNNHSSHTLSRSAAIASSGLGGGNSLTNKTHAALHTNPKEKLVNPSFVKLSSNVTSLSHEKPALGNRFIDQVQPNGSCLKQKPHVALPVEDNNLQHAEMGSTEVLRSELGVNPEKFDEEEQYIESDDDIPYYSDIEAMILDMDLEPDVQDLYENEEVSRYQHEETKRTIIRLEQGVHSFTQRAMASHRALALLHGRHSNYYIKKPEVLLGRATEGVHVDIDLGKGGGTNLISRRQAIIKMDKDGLFYIKNIGKSSMLVNNRELHTDQSQRLLSHHLIELKGMQLIFEINQSCMKQ 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04471 842 Pfam N-terminal region of micro-spherule protein 10 84 IPR025999 -
Vifa2g04471 842 SMART FHA_2 753 810 IPR000253 GO:0005515
Vifa2g04471 842 ProSiteProfiles Forkhead-associated (FHA) domain profile. 754 810 IPR000253 GO:0005515
Vifa2g04471 842 MobiDBLite consensus disorder prediction 521 544 - -
Vifa2g04471 842 PANTHER MICROSPHERULE PROTEIN 1 6 842 IPR037912 GO:0002151|GO:0031011|GO:0071339
Vifa2g04471 842 Pfam FHA domain 755 826 IPR000253 GO:0005515
Vifa2g04471 842 SUPERFAMILY SMAD/FHA domain 740 836 IPR008984 GO:0005515
Vifa2g04471 842 Gene3D - 694 842 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04471 Vifa-Chr2 1310839373 1310844117 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04471 - - tpra:123898987 1108.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04471 2 1310839373 1310844117 Vifa2g04471 2 1310839373 1310844117 ECH