Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04454 ATGGAAGAAGAAAACGGTTACGGCGGAAGTAGCGGTTCAACTCTGGAGACTTCAAAGGCAGAGAGATCGGTGTGGCTGATGAAGTGTCCGGTGGCTGTTGCTAAGTCATGGCAGAATCATCCGCCTTCTCAACCGCTTTCTAAAGTCGTTTTCTCTATTGATCCTCTTCTTCCTGAAGACGATCCTGCTCATCTTCAGTTTACAATGGAGATGTCTGGTACTGATTCTGTGAATATGGCAAAATCTTATTCTTTGAATATGTTTAAAGACTTCGTTCCTATGTGCATCTTCTCTGAGACAAGTGAAGGTGACAAGGTTTCAATGGAAGGGAAAGTAGAGCATAAGTTTGATATGAAGCCACGTCATGAAAACATAGATGATTATGGAAAATTGTGCAGGGAGAGGACAAAGAAATCTATGATTAAAAATCGACAAGTACAGGTTATTGAGGATATTCGAGGAGTGCACATGAGGCCAATGCCTGGAATGGTTGGCTTAGTTTCATCTAATTTTAAGGAAAAGAAGAGGACACAGCCAGTTAAACAAACTGATACAAAGAGAACAAGAAGAGATCGGGGAGAGCTGGAAGATATTATGTTCAAACTATTCGAAAGACAGCCTAACTGGGCTTTGAAGCAACTTGTCCAAGAAACTGATCAACCCGCGCAATTCTTGAAAGAGATCTTGAATGAACTGTGCGTATACAATAAAAGAGGTGCCAACCAAGGAACTTACGAGCTGAAGCCCGAATATAAGAAATCTGTTGAAGACACAAATGCTGAATAA 786 0.4109 MEEENGYGGSSGSTLETSKAERSVWLMKCPVAVAKSWQNHPPSQPLSKVVFSIDPLLPEDDPAHLQFTMEMSGTDSVNMAKSYSLNMFKDFVPMCIFSETSEGDKVSMEGKVEHKFDMKPRHENIDDYGKLCRERTKKSMIKNRQVQVIEDIRGVHMRPMPGMVGLVSSNFKEKKRTQPVKQTDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDTNAE 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04454 261 Pfam TFIIF, beta subunit N-terminus 21 136 IPR040504 -
Vifa2g04454 261 Pfam TFIIF, beta subunit HTH domain 189 252 IPR040450 -
Vifa2g04454 261 SUPERFAMILY Rap30/74 interaction domains 14 120 IPR011039 GO:0006367
Vifa2g04454 261 CDD TFIIF_beta 15 120 - -
Vifa2g04454 261 FunFam General transcription factor IIF subunit 2 187 254 - -
Vifa2g04454 261 Gene3D - 187 254 IPR036388 -
Vifa2g04454 261 SUPERFAMILY "Winged helix" DNA-binding domain 187 253 IPR036390 -
Vifa2g04454 261 PANTHER GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 11 253 IPR003196 GO:0005674|GO:0006366|GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04454 Vifa-Chr2 1307715953 1307718362 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04454 K03139 - gmx:100784080 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04454 2 1307715953 1307718362 Vifa2g04454 2 1307715953 1307718362 ECH