LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g04405	ATGGACTCATCAATACTTTCATCTTGTGCATCTCTTAAAGGAGTTGGAAGAACCAGAAACACTGTTTTCTTAGGGATCAATGATTTTGAAGAATCCACGACTTTTCAAGATGGACCCTATTTTGATACTCCTAAAGCAGACCCTAAAAGTGTTGCTTCAATCATTTTGGGTGGTGGTGCTGGAACTCGCCTTTTTCCTCTTACTAGCAAAAGAGCTAAACCTGCTGTTCCAATTGGAGGGTGTTATAGGCTCATTGATGTTCCTATGAGCAATTGCATCAACAGTGGGATTAGAAAAATATTCATCTTGACACAGTACAATTCTTTCTCACTCAACCGGCATTTGTCTCGCGCGTATAATTTTGGAAATGTTTCTACTTATGGTGAGGGTTTTGTGGAGGTATTGGCGGCAACTCAAACATCTGGAGAGGCGGGGAAGAAATGGTTCCAAGGGACAGCTGATGCTGTGAGGCAATTTTTATGGGTTTTTGAGGATGCTAAGACCAAGAATGTTGAGCATATATTGATACTTTCCGGTGATCATCTTTACCGAATGAACTATATGGATTTTGTACAGAAACACATCGACACAAATGCTGATATCACAGTTTCGTGTCTTCCAATGGACGACAGTCGAGCATCAGATTATGGGTTGATGAAAATTGACGGAACAGGACGGATTATACAGTTTGCTGAAAAACCTAAGGGATCAGATTTGAAAGCAATGCGCGTTGATACCACGGTTCTTGGGTTATCTCCCGAAGAAGCAAAGAAACAGCCTTATATTGCGTCCATGGGTGTCTACGTGTTTAGAACTGAGACCCTACTTGAACTATTAAAATTGAACGGTTCTACATGCAATGACTTCGGATCTGAAATCATCCCGTCTGCTGTTAACGGGCACAATGTCCAGGCATTTTTGTTCAATGACTACTGGGAAGATATTGGAACCATAAAGTCCTTCTTTGACGCAAATCTGGCCCTAACAGAACCGTATCCAAAATTTCAATTCTATGATCCAAAGACACCTTTCTTCACTTCACCAAGATTCCTACCTCCCACTAAAGTAGAAAAATGCAAGATTGTGGATGCAATTATTTCTCATGGTTGCTTCTTGAGAGAATGTAGTGTTCAACATTCTATTGTTGGTATACGCTCCCGTTTAGAGTCTGGTGTGGAGCTTCAGGATACCATGATGATGGGTGCTGATTACTATCAAACTGAGGCTGAAATTGCATCTCTGCTGGCAGAAGGAAATGTCCCAATCGGTGTTGGAGAAAATACCAAAATCAGGAATTGTATAATCGACAAGAATGCAAAAATCGGAAGAAATGTTACCATTACCAATGCGGATGGTGTTGAAGAAGCAGATAAAACTAAGGAAGGATTTTACATTAGGTCAGGCATCACCGTTATACTGAAGAATGCAACAATTAAAGATGGAACAGTTATATGA	1455	0.4055	MDSSILSSCASLKGVGRTRNTVFLGINDFEESTTFQDGPYFDTPKADPKSVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQYNSFSLNRHLSRAYNFGNVSTYGEGFVEVLAATQTSGEAGKKWFQGTADAVRQFLWVFEDAKTKNVEHILILSGDHLYRMNYMDFVQKHIDTNADITVSCLPMDDSRASDYGLMKIDGTGRIIQFAEKPKGSDLKAMRVDTTVLGLSPEEAKKQPYIASMGVYVFRTETLLELLKLNGSTCNDFGSEIIPSAVNGHNVQAFLFNDYWEDIGTIKSFFDANLALTEPYPKFQFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRECSVQHSIVGIRSRLESGVELQDTMMMGADYYQTEAEIASLLAEGNVPIGVGENTKIRNCIIDKNAKIGRNVTITNADGVEEADKTKEGFYIRSGITVILKNATIKDGTVI	484

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g04405	484	ProSitePatterns	ADP-glucose pyrophosphorylase signature 2.	148	156	IPR005836	GO:0005978\|GO:0008878
	Vifa2g04405	484	ProSitePatterns	ADP-glucose pyrophosphorylase signature 3.	263	273	IPR005836	GO:0005978\|GO:0008878
	Vifa2g04405	484	FunFam	Glucose-1-phosphate adenylyltransferase	350	484	-	-
	Vifa2g04405	484	NCBIfam	glucose-1-phosphate adenylyltransferase	52	449	IPR011831	GO:0005978\|GO:0008878
	Vifa2g04405	484	ProSitePatterns	ADP-glucose pyrophosphorylase signature 1.	57	76	IPR005836	GO:0005978\|GO:0008878
	Vifa2g04405	484	CDD	ADP_Glucose_PP	54	315	-	-
	Vifa2g04405	484	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	41	349	IPR029044	-
	Vifa2g04405	484	Gene3D	Hexapeptide repeat proteins	350	484	-	-
	Vifa2g04405	484	Pfam	Nucleotidyl transferase	53	329	IPR005835	GO:0009058
	Vifa2g04405	484	CDD	LbH_G1P_AT_C	352	478	-	-
	Vifa2g04405	484	FunFam	Glucose-1-phosphate adenylyltransferase	36	349	-	-
	Vifa2g04405	484	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	51	445	IPR029044	-
	Vifa2g04405	484	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED	38	484	IPR011831	GO:0005978\|GO:0008878
	Vifa2g04405	484	SUPERFAMILY	Trimeric LpxA-like enzymes	346	484	IPR011004	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g04405	Vifa-Chr2	1292610086	1292613268	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g04405	K00975		-	gmx:100793757	825.083

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa2g04405	2	1292610086	1292613268	Vifa2g04405	2	1292610086	1292613268	ECH