Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04404 ATGAAGCATAAGTTGTTGTTTCTAATTCTAGTTTTCTTAGTTCTTTGTGTAGAAGCAGATGATGATGATGGGTTTGTGAAAACAAGAGGAGTACAGCTTATGCTGAATGACACCCCTTATTATGCCAATGGTTTTAATGCATATTGGTTAATGTACTTTGCTTCTGATCCATCTCAGAGAAACAAAGTATCATCAACTTTTCAAGAGGCTGCAAATCATGGACTTAACATAGCTAGAACTTGGGCTTTCAGTGATGGTGGTTATAAACCACTGCAATACTCTCCTGGATCCTACAATGAGGAAATGTTCCAGGGGTTGGACTTTGTGATGGTAGAAGCTAGAAAATATGGGATGAAAGTGATTTTGAGTTTGGTGAACAACTATGAGGGTCTTGGTGGGAAGAAACAATATGTGGAATGGGCAAGGAGTGAGGGACAGTCCATAAATTCTGAAGATGATTTCTTCACTAATAATGTTGTGAAGGGTTACTATAAAAACCACATTAAGACAGTGCTTACAAGACATAACAACTTCAGTGGAGTTGCTTACAAAGATGACCCTACTATAATGGCTTGGGAGCTTATGAACGAGATTAGATGCTCTTCAGACCATTCAGGAAATACAGTCCAGGGTTGGGTTACTGAGATGGCATCTTACTTGAAATCCATTGATGGAAACCATTTGCTTGAAGCTGGTTTAGAAGGCTTCTATGGACAATCCAAGACCGAATCTAATCCTAACTTTCAAGTAGGAACCGATTTTATTGCAAACAACCAAATCCCCAACATCGATTTTGCAACACTACATTCCTACCCAGATCAATGGTTATCAAGTTCAAGCTATGAAGACCAACTCTCTTTCTTAAGGGAGTGGCTCAGTGAGCACATCCAAGATGCACAGAACATCCTTCACAAGCCACTTCTACTTGCAGAATTTGGAATTTCCACTAAAAACTTGGGCAATAATAGCTCAATACTGAGGGATAAGTTTTTCAATACAGTATATTCAGCTGTATATTCATCAGCAAGTGCTGGTGGAACCGCTGTTGGTGGCTTATTTTGGCAACTTCTTGCTCAAGGGATGGATTCTTTCCGAGATGATTACGAAGTGATTTTAGCTGAGAGTACCTCAACATCGACTTTGATTTCTCAGGAGTCTCGAAAACTAAAACGAATTCGCAAGATGTACGCCAGACTTCTCAAACATTGA 1209 0.3954 MKHKLLFLILVFLVLCVEADDDDGFVKTRGVQLMLNDTPYYANGFNAYWLMYFASDPSQRNKVSSTFQEAANHGLNIARTWAFSDGGYKPLQYSPGSYNEEMFQGLDFVMVEARKYGMKVILSLVNNYEGLGGKKQYVEWARSEGQSINSEDDFFTNNVVKGYYKNHIKTVLTRHNNFSGVAYKDDPTIMAWELMNEIRCSSDHSGNTVQGWVTEMASYLKSIDGNHLLEAGLEGFYGQSKTESNPNFQVGTDFIANNQIPNIDFATLHSYPDQWLSSSSYEDQLSFLREWLSEHIQDAQNILHKPLLLAEFGISTKNLGNNSSILRDKFFNTVYSAVYSSASAGGTAVGGLFWQLLAQGMDSFRDDYEVILAESTSTSTLISQESRKLKRIRKMYARLLKH 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04404 402 PANTHER - 7 394 IPR045053 GO:0004553
Vifa2g04404 402 Gene3D Glycosidases 21 393 - -
Vifa2g04404 402 SUPERFAMILY (Trans)glycosidases 25 375 IPR017853 -
Vifa2g04404 402 Pfam Cellulase (glycosyl hydrolase family 5) 58 319 IPR001547 GO:0004553|GO:0071704
Vifa2g04404 402 FunFam Mannan endo-1,4-beta-mannosidase 6 22 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04404 Vifa-Chr2 1292608230 1292609850 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04404 7 400 Glycoside Hydrolase AT5G66460 63.591 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04404 K19355 - gmx:100794126 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04404 2 1292608230 1292609850 Vifa2g04404 2 1292608230 1292609850 ECH