Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04403 ATGGGTGTCATCACTGCCCCCTGTTACTGTCACACCACCGTCGGATCACCAAAACCCTACCTTTCTCCGTCATCTCACACTTTCCGTCATTCCCTTCCCATTTCGCCATCCACACTCAGACGAATTTCATGCCTCGCCGCTTCCGCTCCCGCCGCCGAATCTTCTCTCACCGCGAAAGTTGGAAGTGGGTTGAAAGATTTTATTCACATAGATGATTTTGACAAGGAAACTATTTTGAAGATATTGGATCGAGCTATTGAGGTGAAGGCATTGTTGAAATCGGGGGATAGGACATTTCGGCCTTTTGAAGGGAAGACAATGTCCATGATATTTGCTAAGCCTTCCATGAGAACAAGGGTTTCATTTGAGACTGGTTTTTCATTGTTAGGTGGTCATGCTATTTACTTAGGACCCGATGACATTCAGATGGGGAAGCGAGAGGAGACTCGCGATGTTGCTCGGGTTTTGTCTCGATATAACGATATCATTATGGCCCGAGTTTTTTCTCATCAGGACATACTTGATCTTTCAAAGTATGCAACTGTCCCTGTCATCAATGGTTTGACAGACTACAACCATCCTGTCCAGATAATGGCTGATGCCCTTACTATGATTGAGCACATTGGTCGGTTTGAAGGAACCAAGGTTGTCTATGTTGGAGATGGAAATAATATTGTCCACTCATGGTTGTTGTTGGCAGCTGTAGTTCCTTTTCACTTTGTTTGTGCATGTCCAAAAGGTTTTGAACCTGATGCGAAAACAGTTGAGAAAGCAAGGAAGGCTGGAATCAGCAAGATTGAGATAAGTCATGATCCCAAAGAAGCTGTTAGAGGAGCTGATGTTGTGTATTCAGATGTCTGGGCCAGCATGGGGCAAAAGGAAGAAGCTGAATATCGTCGTCAAGTGTTTAAAGGATTTCAGGTGGATCAAAATCTTATGGATGTGGCTGGTTCAAAGGCATTTTTCATGCACTGCTTACCCGCAGAAAGAGGCGTGGAGGTGACTGACGAAGTTGTTGAAGCTCCATATTCAATAGTCTTCCCTCAAGCTGAGAACCGAATGCATGCACAGAATGCTATAATGCTCCATGTACTTGGCAAGTAG 1104 0.4466 MGVITAPCYCHTTVGSPKPYLSPSSHTFRHSLPISPSTLRRISCLAASAPAAESSLTAKVGSGLKDFIHIDDFDKETILKILDRAIEVKALLKSGDRTFRPFEGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDVARVLSRYNDIIMARVFSHQDILDLSKYATVPVINGLTDYNHPVQIMADALTMIEHIGRFEGTKVVYVGDGNNIVHSWLLLAAVVPFHFVCACPKGFEPDAKTVEKARKAGISKIEISHDPKEAVRGADVVYSDVWASMGQKEEAEYRRQVFKGFQVDQNLMDVAGSKAFFMHCLPAERGVEVTDEVVEAPYSIVFPQAENRMHAQNAIMLHVLGK 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04403 367 NCBIfam ornithine carbamoyltransferase 65 365 IPR002292 GO:0016743
Vifa2g04403 367 Gene3D Aspartate/ornithine carbamoyltransferase 196 361 IPR036901 GO:0006520|GO:0016597|GO:0016743
Vifa2g04403 367 FunFam ornithine carbamoyltransferase, chloroplastic 65 200 - -
Vifa2g04403 367 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 65 206 IPR006132 GO:0006520|GO:0016743
Vifa2g04403 367 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 193 204 IPR006130 GO:0006520|GO:0016597|GO:0016743
Vifa2g04403 367 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 330 353 IPR006130 GO:0006520|GO:0016597|GO:0016743
Vifa2g04403 367 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 111 130 IPR006130 GO:0006520|GO:0016597|GO:0016743
Vifa2g04403 367 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 318 327 IPR006130 GO:0006520|GO:0016597|GO:0016743
Vifa2g04403 367 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 64 366 IPR036901 GO:0006520|GO:0016597|GO:0016743
Vifa2g04403 367 Gene3D Aspartate/ornithine carbamoyltransferase 65 195 IPR036901 GO:0006520|GO:0016597|GO:0016743
Vifa2g04403 367 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 212 363 IPR006131 GO:0006520|GO:0016597|GO:0016743
Vifa2g04403 367 Hamap Ornithine carbamoyltransferase, catabolic [argI]. 64 366 IPR024904 GO:0004585|GO:0006591
Vifa2g04403 367 PRINTS Ornithine carbamoyltransferase signature 344 355 IPR002292 GO:0016743
Vifa2g04403 367 PRINTS Ornithine carbamoyltransferase signature 109 123 IPR002292 GO:0016743
Vifa2g04403 367 PRINTS Ornithine carbamoyltransferase signature 182 196 IPR002292 GO:0016743
Vifa2g04403 367 PRINTS Ornithine carbamoyltransferase signature 282 292 IPR002292 GO:0016743
Vifa2g04403 367 PRINTS Ornithine carbamoyltransferase signature 142 155 IPR002292 GO:0016743
Vifa2g04403 367 FunFam Ornithine carbamoyltransferase 201 352 - -
Vifa2g04403 367 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 64 367 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04403 K00611 - gmx:100775828 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04403 2 1292414820 1292417049 Vifa2g04403 2 1292414820 1292417049 ECH