Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04389 ATGGGCGAGGAAACACAACTTCAACCACAATCCCTAACCGGAACTCAAATTGAACCGCAATCTCAGCCGCAGCTTCCGCCACAAACGGCTGTTTCGGTTTCTTCCGATCACATCATCGACGCTATTATTCCCGTCGAGTCCGAACTCAGCAATGTTCCTCCACACACCAATTCACCGGCGACCAAGATCCCCCTCCGTCCTCGAAAGATCCGGAAAGTCTCACCGGATCCGACGTCTTCCGAATCGCAAACGGAAATCCCTAAACCAGTCAATTCCGGTGGGAAATCGAAAGCGGTTCAACAACAGCGAGCCATAGCGCTTCCGAGGATTGTTGCTAGGTCGCTTTCGTATGAAGGTGAGGTTGAGATGGCGATTCGTTACCTTCGTACTGCTGATCCACTTCTATCGCCTCTCATTAACATTCATCAACCACCTACTTTTGATAGTTTCCATACACCGTTTCTCGCCCTGACTCGGAGCATTTTGTATCAGCAACTCGCGTTTAAGGCTGGGACTTCAATTTATACGCGATTTATTGGTCTCTGTGAGGGAGAAGGTGGCGTTGTTCCGGAGACCGTGCTTCGTTTGAATCCTCAACAGCTTAGGCAAATTGGGGTTTCTGGGAGGAAGGCGAGTTATTTACATGATTTGGCTAGGAAGTATCAGAATGGGATACTTTCTGATTCAGCTATTGTAAATATGGATGATAAGTCGCTTTTCACTATGCTTACTATGGTGAATGGGATTGGGTCTTGGTCTGTTCATATGTTTATGATATTCTCGCTGCATAGACCGGATGTTCTTCCTATTAATGATCTTGGTGTTCGGAAAGGGGTGCAGATTCTTTATAATCTTGATGATTTACCTAGGCCGTCTCAGATGGAGCAGTTGTGTGAGAAGTGGAGGCCTTATCGATCTGTTGCTTCGTGGTATATGTGGAGGTTTGTTGAGGCTAAGGGGACTCCTTCGACAGCTGTGGCTGTTGCCACTGGGGCTGGCTTGCAGCAGCATCAGATGGAGCATCACCACCAACAGCAGCAACAGCAGCAGCAGCAGCATCCTTCGCAACAACAGCTTATGGATCCCATGAATGGCATGTTTAATATCGGGGCTGCCTGCGCTTGGGGACAGTGA 1134 0.4841 MGEETQLQPQSLTGTQIEPQSQPQLPPQTAVSVSSDHIIDAIIPVESELSNVPPHTNSPATKIPLRPRKIRKVSPDPTSSESQTEIPKPVNSGGKSKAVQQQRAIALPRIVARSLSYEGEVEMAIRYLRTADPLLSPLINIHQPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIGLCEGEGGVVPETVLRLNPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQILYNLDDLPRPSQMEQLCEKWRPYRSVASWYMWRFVEAKGTPSTAVAVATGAGLQQHQMEHHHQQQQQQQQQHPSQQQLMDPMNGMFNIGAACAWGQ 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04389 377 CDD ENDO3c 154 315 IPR003265 GO:0006284
Vifa2g04389 377 Gene3D Hypothetical protein; domain 2 151 264 - -
Vifa2g04389 377 FunFam DNA-3-methyladenine glycosylase II 150 264 - -
Vifa2g04389 377 SMART endo3end 162 317 IPR003265 GO:0006284
Vifa2g04389 377 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 46 325 - -
Vifa2g04389 377 MobiDBLite consensus disorder prediction 337 361 - -
Vifa2g04389 377 Pfam HhH-GPD superfamily base excision DNA repair protein 159 302 IPR003265 GO:0006284
Vifa2g04389 377 SUPERFAMILY DNA-glycosylase 144 315 IPR011257 GO:0003824|GO:0006281
Vifa2g04389 377 MobiDBLite consensus disorder prediction 1 33 - -
Vifa2g04389 377 MobiDBLite consensus disorder prediction 45 97 - -
Vifa2g04389 377 FunFam Probable DNA-3-methyladenine glycosylase 2 250 314 - -
Vifa2g04389 377 MobiDBLite consensus disorder prediction 76 97 - -
Vifa2g04389 377 Gene3D - 127 314 - -
Vifa2g04389 377 MobiDBLite consensus disorder prediction 333 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04389 Vifa-Chr2 1289161025 1289166534 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04389 K01247 - gmx:100790760 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04389 2 1289161025 1289166534 Vifa2g04389 2 1289161025 1289166534 ECH