Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04380 ATGGCCGCAGATGCAGCATGCTGTGACACCAAATTCTGGCTCTACATAGTTGTCATCATAGGATTGGTTTGCTTCGCTGGTCTCATGGCTGGTCTCACCCTCGGACTCATGTCTTTGGGTCTTGTCGACCTCGAAGTTCTCATCAAATCCGGTCGCCCTCAACATCGTATCCATGCCGCTAAAATATTCCCTGTGGTTAAGAATCAGCATCTTTTGCTTTGTACTCTTTTGATTGGAAATTCCTTAGCCATGGAGACTCTTCCGATTTTTCTTGATGCTATTGTGCCTCCTTATGCTGCTGTTTTGATTTCGGTTACCCTTATCCTCATTTTTGGAGAGATATTGCCTCAAGCAATTTGTACTAGATATGGATTGATGGTTGGCGCAATGCTTGCCCCGCTTGTTCGTGTTCTTCTTATAGTATTTTATCCGATTGCTTATCCCATCAGCAAGGTGCTTGATTGGATGTTGGGTAAAGGAAAAGCTGCTCTTTTAAAGAGGGCAGAGCTCAAGACCTTTGTAAATTTTCATGGGAATGAGGCAGGGAAAGGAGGAGATTTGACGCACGATGAGACAACCATCATAGCCGGAGCGCTTGAATTGACTGAGAAGACAGCAAAAGATGCCATGACTCCCATATCAAAGGCATTTTCCCTTGATTTGGATGCAACTCTAAATTTGGAGACCCTGAATTCAATAATGACAATGGGTCATAGTCGAGTCCCAGTTTATGCAGGAGAGCGGACAAACATTATGGGACTTGTTCTGGTTAAAAATCTCTTTATGGTTGACTCAAAGGCTTCAGTTCCTCTAAGAAAAATGATAATCAGAAAAATTCCTCGTGTTTCAGAGAATATGCCTCTGTATGATATACTGAATGAATTTCAGAAGGGTCACAGTCATATTGCAGTTGTATATAGGGATCTAAATGATAAAAAAGGAACATACAAAAAAATTAAAGATTCAGAACAACTTGAGTTTAAAGACAGCTGTAAGAACAAAGGAAAAAGTGCTCCCTTAGATAAAGGTGCAATGTTGGAGCCCGGTGATACTTTGATTGCTGACAGTCCACAGGTGAAAAAGAGTCCCCCAGCAACGCCGGCTTTTAAAAAGCGACACAGAGGTTGTTCATATTGCATTTTGGACCTTGATAATGCTCCCCTGCCTGTCTTTCCTCCCAGTGAAGTGGTTGTTGGTGTTATTTCAATGGAGGATGTCATCGAAGAGCTTCTTCAGGAGGAGATACTTGATGAAACGGATGAATATGTCAACATTCATAACAAGATAAAAGTTAATATGAATGCTTCTAAGGAGAAGGCTCCTGATGCAAATCTGTTGCAGCCTTCTAATTTAGCAGTTCAAGGACACACACCAACTAATTCAACTTCTACAGCTACTTCTCCATCGGGCTCACCTACCACCATTGATCAAATCTCTGAAAGCGAGTCACTCAGGAATCAATAA 1464 0.418 MAADAACCDTKFWLYIVVIIGLVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQHRIHAAKIFPVVKNQHLLLCTLLIGNSLAMETLPIFLDAIVPPYAAVLISVTLILIFGEILPQAICTRYGLMVGAMLAPLVRVLLIVFYPIAYPISKVLDWMLGKGKAALLKRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLNLETLNSIMTMGHSRVPVYAGERTNIMGLVLVKNLFMVDSKASVPLRKMIIRKIPRVSENMPLYDILNEFQKGHSHIAVVYRDLNDKKGTYKKIKDSEQLEFKDSCKNKGKSAPLDKGAMLEPGDTLIADSPQVKKSPPATPAFKKRHRGCSYCILDLDNAPLPVFPPSEVVVGVISMEDVIEELLQEEILDETDEYVNIHNKIKVNMNASKEKAPDANLLQPSNLAVQGHTPTNSTSTATSPSGSPTTIDQISESESLRNQ 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04380 487 Pfam Cyclin M transmembrane N-terminal domain 18 189 IPR002550 -
Vifa2g04380 487 Gene3D - 189 323 IPR046342 -
Vifa2g04380 487 SUPERFAMILY CBS-domain pair 194 412 IPR046342 -
Vifa2g04380 487 FunFam DUF21 domain-containing protein 189 324 - -
Vifa2g04380 487 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Vifa2g04380 487 MobiDBLite consensus disorder prediction 447 487 - -
Vifa2g04380 487 CDD CBS_pair_CorC_HlyC_assoc 205 306 IPR044751 -
Vifa2g04380 487 PANTHER METAL TRANSPORTER CNNM 3 448 IPR045095 GO:0010960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04380 Vifa-Chr2 1287713406 1287717556 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04380 K16302 - gmx:100804572 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04380 2 1287713406 1287717556 Vifa2g04380 2 1287713406 1287717556 ECH