Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04278 ATGGCGGTTTCCGGTAGTCCTAACGGCGGCTCCACCCCTCCACCTCCACCGCCGCCGCCACAACAAGAACAAGCTAACAAGCTTGGATTCACAAAACCTATCTCTCTCGCTGGTCCATCCACAGCTGATCTCCATCGTAACACCGAGTTAGAGAAGTTTTTGCTTGATTCGGGACTTTATGAGAGCAATGAAGAATCTGCAAGCAGACAAGAGGTTCTTCGCCGCCTAGATCAGATTGTGAAAAGCTGGGTGAAGCTGTTGACCCGCCAACGAGGCTACACAGATCAGATGGTTGAGGATGCAAATGCGGTCATTTTCACTTTCGGCTCTTACCGATTAGGGGTTCATGGACCTGGAGTGGACATAGACACTTTGTGCATTGGTCCTTCCTATGTAAATCGAGAGGAGGACTTCTTCATCGTTTTGCACAACATCCTGGCTGAAATGGAAGAAGTTACTGAACTTCAACCGGTTCCTGATGCACATGTCCCAGTTATGAAATTCAAGTTCCAGGGAATTTCTATAGATTTGCTGTATGCAAGGATATCTATTTTGGTTGTGCCAGAAGACCTGGATATCTCAGACGGTTCCATTCTGCATGATGTTGATGAACAAACTGTTCGAAGTCTTAATGGCTGCAGAGTGGCGGATCAAATTCTTAAACTTGTTCCGAATGTCGAGCACTTCCGAACTACACTGAGATGTTTGAAGTTTTGGGCTAAAAGACGCGGTGTTTATTCAAATGTTACTGGATTCCTTGGAGGTGTAAATTGGGCTATTTTAGTTGCTAGAGTTTGCCAGTTTTACCCTAATGCAATCCCTAGTATGTTGGTTTCTAGATTCTTCAGGGTCTATTCACAGTGGCGGTGGCCAAACCCTGTAATGCTGTGCTCTATAGAAGAGAATGAACCACATCTCCCTATATGGGATCCTCGCAGAAATCATAGGGACAGGTTTCACCTTATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCCAGCTACAATGTCTCGACAAGCACTCTCCGTGTTATGATGGAACAGTTCCAATATGGCAACAAGATTTGTGACGAAATTGAGCTTAACAAATCACAATGGAGTGCACTTTTTAAGCCGTATGTCTTTTTTGAGGCATACAAAAATTATTTACAAGTAGACATAGTTGCATTAGATGCCGTTGATTTGCTTTTGTGGAGGGGTTGGGTAGAATCCCGACTGAGGCAGCTAACCTTGAAGATAGAGCGAGATACAAATGGGATGCTGCAGTGTCATCCTTATCCACACGAGTATGCAGACACATCCAAGCCTTGTCCGCATTCTGCATTTTTCATGGGGTTGCAAAGAAAAGAGGGAGTAAGAGGTCAAGAAGGTCAGCAATTTGATATACGTGGAACGGTTGATGAATTCAGACAAGATATTATTATGTATGTATACTGGAAGCCGGGGATGGAAATTTATGTTTCTCATGTTCGTCGAAAGCAGCTCCCTGCATTTGTTTTTCCAGATGGTTACAGACGTACTCGAATGCCGAGGCTTATGAGCCATGCAGCTGACAAAATGGGACAATATACCACAAAGTGCTACTCTGGATCCAGCTCTTCCGAAAGGTGCATCAAGAGGAAGAATAGCCATGAAATGGGGGGTGTGAAGCCTGATAAACCTGAGAAGCGGACATCTGTTAGCCCACAGAGGCTAGAGTGTGTTTCACCTGAAAGTTATACTAGTAAATTGGATGGTACACCTCAAATGAATATTGAGTGTATTGAAGCGGTTAGGCCAGACGGATCAACGACGAAGGATGCCAAGAGCAATTGTGAAATCAAGTCATCTGATGGACTCTTAGGAAGTGATACAATTATTGAAGTAGGTGACATGCAGATAAATGAAACGTGTTTTGTTGACTCCAATCATGATAGGCTAAAATCAAGGGATTTAGTAGTTCAGAATGAGAATGGAGTCAACGGGGACAAAGCTCTGGATCTGGCTTTTGTTTGCTTGGAAAAGGCAGAAACTACATCTTCAAAAAGATTGACAAACTGGGAAGAGAATGCTGTTAAAATGGATCAAGAACTAGACAAAGCTTGTAATTTCACAAGGGCTGAATGTTCAGATTATGCACCAAATGCCAGCATCCAGAACCTTAATTGCGAGGGTGTTGTTTGTGTGGCTGATCCTGATCAATTCTGA 2190 0.4361 MAVSGSPNGGSTPPPPPPPPQQEQANKLGFTKPISLAGPSTADLHRNTELEKFLLDSGLYESNEESASRQEVLRRLDQIVKSWVKLLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREEDFFIVLHNILAEMEEVTELQPVPDAHVPVMKFKFQGISIDLLYARISILVVPEDLDISDGSILHDVDEQTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARVCQFYPNAIPSMLVSRFFRVYSQWRWPNPVMLCSIEENEPHLPIWDPRRNHRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFQYGNKICDEIELNKSQWSALFKPYVFFEAYKNYLQVDIVALDAVDLLLWRGWVESRLRQLTLKIERDTNGMLQCHPYPHEYADTSKPCPHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQDIIMYVYWKPGMEIYVSHVRRKQLPAFVFPDGYRRTRMPRLMSHAADKMGQYTTKCYSGSSSSERCIKRKNSHEMGGVKPDKPEKRTSVSPQRLECVSPESYTSKLDGTPQMNIECIEAVRPDGSTTKDAKSNCEIKSSDGLLGSDTIIEVGDMQINETCFVDSNHDRLKSRDLVVQNENGVNGDKALDLAFVCLEKAETTSSKRLTNWEENAVKMDQELDKACNFTRAECSDYAPNASIQNLNCEGVVCVADPDQF 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04278 729 MobiDBLite consensus disorder prediction 1 42 - -
Vifa2g04278 729 MobiDBLite consensus disorder prediction 9 23 - -
Vifa2g04278 729 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 376 501 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vifa2g04278 729 Pfam Poly(A) polymerase central domain 29 372 IPR007012 GO:0043631|GO:1990817
Vifa2g04278 729 MobiDBLite consensus disorder prediction 543 566 - -
Vifa2g04278 729 MobiDBLite consensus disorder prediction 543 561 - -
Vifa2g04278 729 FunFam Poly(A) polymerase alpha, putative 61 217 - -
Vifa2g04278 729 SUPERFAMILY Nucleotidyltransferase 26 222 IPR043519 -
Vifa2g04278 729 CDD NT_PAP_TUTase 69 223 - -
Vifa2g04278 729 Pfam Poly(A) polymerase predicted RNA binding domain 376 434 IPR007010 GO:0003723|GO:0043631
Vifa2g04278 729 SUPERFAMILY PAP/OAS1 substrate-binding domain 224 373 - -
Vifa2g04278 729 Gene3D - 29 371 - -
Vifa2g04278 729 PANTHER POLY A POLYMERASE 18 555 - -
Vifa2g04278 729 Pfam Nucleotidyltransferase domain 102 182 IPR002934 GO:0016779
Vifa2g04278 729 Gene3D Beta Polymerase, domain 2 61 217 IPR043519 -
Vifa2g04278 729 FunFam Putative poly(A) polymerase gamma 200 371 - -
Vifa2g04278 729 Gene3D Poly(A) polymerase predicted RNA binding domain 375 491 - -
Vifa2g04278 729 FunFam Nuclear poly(A) polymerase 4 375 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04278 Vifa-Chr2 1256336425 1256341925 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04278 K14376 - gmx:100802620 1171.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04278 2 1256336425 1256341925 Vifa2g04278 2 1256336425 1256341925 ECH