Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04273 ATGAAGGACGATATCAAAGCACTTGAAAATGGTGTTGCAAAGGATCCAAATTCTCTTCTTGATGATGATGGAAGACCCAAAAGAACTGGAACGGTATGGACTGCGACCGCACATATCATAAACGCAGTTATTGGGTCAGGAGTCCTCTCCTTACCATGGGCCATGTCCCAAATGGGATGGACTCTTGGAATATCATGCATTTTTGTGTTTGCTGGTATTACATTATACACATCAAATCTTCTAGCTGATTGTTATAGATCACCAGATCCTGTTAGTGGCAAAAGAAACACCACTTATATGGAAGCTGTCAAAGTTCACTTAGGTGGAAAACGTTATGTGTTTTGTGGTTTGGTTCAATACATTAACCTAGCTGGTTTCATAATTGGTTTCATCATAACTACATCCACAAGTATAGTGACAATAATGAAAAACAATTGTTACCGTAAGAATGGGTTTGAAGCTTCATGTCGTTTTTCTAATAACCCATACATGATTACTATTGGAGTAATCGAAATAGTATTATCTCAAATTCCAAATTTTCACAAGCTATCTATCATCTCCGTCATGGCAGCTACCATGGCTTTTGGCTATGCTTCCATTGGAGCTGGACTTTCTCTTTCAACCGTTATCCAAGGAAATGGGAACTTAAAGAGCACGACAACATTCGCGGGAAATGACAAAAATCGTAGTACATCAGATATATCATGGAATATGCTAGTTGCAATCGGAGACATTGCACTAGCTAGTGGTTACGCTCAAATTGCAGTAGATATACAAGATAGTTTGAAATCATCACCTCCAGAAAATAAAACAATGAAGAGAGCAAACACACTTGGTATATTTATTATGACTATTTTCTTTATCTTGAATGCGTGTGCTGGATATGCTGCATTTGGTTCAAACACTCCTGGTAACATACTCATGAGTTCCGGCTTTCGCAAACCTTTCTGGTTATTGGAATTGGCCAATGCCTTTATAGTTGTCCACCTTGTGGGAGCATTTCAGGTACTAATCCAACCTGTATTTCGTATAGTTGAAATGATAGCTGCGGAAAAGTGGCCAAACTCAAGTTTTGTAACAAGGGAGATTCCGATGAATTTTGGCAAAACAAAATACACTATCAATTACTTTAGATTACTTTGGAGGACAGTCTTTGTGATAGTGGTAACTGTTTTAGCCATGGCAATGCCATTTTTCAATGCAATGATTGCCCTTCTTGGTGCCGTTGGATTTTGGCCTTCAGTTGTTTATTTTCCGGTGGAGATGTATATTGTCAAACAAAACATCAGAAAAGGAACAACTCGTTGGATTGGACTTCAAACGTTGAGCATTTTCTCTTTGATTGTGTCATTGGCTGCGGCAATTGGAGCTATTCATGGGTTGGGTGAAGCTGTTGTAAAATACAAACCTTTTATGTATAAGGCCTAG 1428 0.3859 MKDDIKALENGVAKDPNSLLDDDGRPKRTGTVWTATAHIINAVIGSGVLSLPWAMSQMGWTLGISCIFVFAGITLYTSNLLADCYRSPDPVSGKRNTTYMEAVKVHLGGKRYVFCGLVQYINLAGFIIGFIITTSTSIVTIMKNNCYRKNGFEASCRFSNNPYMITIGVIEIVLSQIPNFHKLSIISVMAATMAFGYASIGAGLSLSTVIQGNGNLKSTTTFAGNDKNRSTSDISWNMLVAIGDIALASGYAQIAVDIQDSLKSSPPENKTMKRANTLGIFIMTIFFILNACAGYAAFGSNTPGNILMSSGFRKPFWLLELANAFIVVHLVGAFQVLIQPVFRIVEMIAAEKWPNSSFVTREIPMNFGKTKYTINYFRLLWRTVFVIVVTVLAMAMPFFNAMIALLGAVGFWPSVVYFPVEMYIVKQNIRKGTTRWIGLQTLSIFSLIVSLAAAIGAIHGLGEAVVKYKPFMYKA 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04273 475 Pfam Transmembrane amino acid transporter protein 28 459 IPR013057 -
Vifa2g04273 475 PANTHER OS05G0424000 PROTEIN-RELATED 30 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04273 Vifa-Chr2 1254978542 1254981413 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04273 15 471 Organic Solute Cotransporters AT1G58360 51.852 6.08e-174 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04273 K24917 - gmx:100804643 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04273 2 1254978542 1254981413 Vifa2g04273 2 1254978542 1254981413 ECH