Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04269 ATGGATAATATCAGCGATGATGAAATCGAGGATGAATTCCTCTACGAAGTCGAAGAAGAATTCAACAACCCCTTCCTCCACTTCCCCCCTCCCTCGCCATCCCCCTCCTCCTCTTCTCAAGACCAACCTGACGCCATTGCAATCGCTTCGCCCGCCGAATTCACCTTCAATACCAGTATCGCCTCTTTGCACACATATCTCGGTGACGTGGAAGACACGCGCCACCGGACTTCTTTTTTGGATGGCGGTGCTATATTGAACATTCCACTCTTTTGTCTTCAAGGCGTTGTACTCTTTCCTGGGGCTACTCTTCCCCTTAGGGTTACTGTTTCTCGTTTTGTGACTGCTATTGAGAGAGCTTTGAGTCAAGTTGATGTTCCTTATACCATTGCTGTCATTCGGGTTCACAGGGAAACTGGAAGTTTTACGATGAAAGCGGCTAGCATTGGGACAACTGCAGTGATTCGGCAATATGGGCGTCTAGAGGATGGTTCGATGAATGTGGTGAGCCGTGGACAACAACGATTTCACCTAAGGCGGTGTTGGAATGACGTGGACGGAGTGCCTTATGGAGAGATCCAAATTATTGAGGAAGATTTACCATTGCGAACTCCAAGGGATGCTTTTGGCAAATCAGCATCATCATGTAATATGCTTCGCAGCCGTGTTAAAATGCATGGATTAAAAAACAGGGAAAATGAATTAGCAAACAGTAGTGATATGATGGATGTATCAGCAAGCACTAGTGATCAGGAAATAAGATCCAATTTGGATTCGAGAATTGGGATCTGTTCCACTTCTGGAAAGCTGTCATCCAAAGAAGAGCTTAATAGATGCTATAAGAATAAACCATCACATATAATTTCAAAAGTATTCTTACCCCACTGGGTATATCGCATGTATGACTCCTATTTGCTTGCACAAAAGGCCGCAGATATGTGGAAGCAAATAGTTGGGGTTCCTAGTATGGATAGTCTCATCAAGAAGCCTGATGTTTTATCATTTCACATCGCCAGTAAAATACCTGTTTCTGAATCTACAAGGCAAGAGCTTTTAGATATCGATGGCATCGTATATAGGTTGCGCAGGGAAATTGAATTACTAGAGAGCATTGATCTTGTCCGATGTAAAATATGCCAAACTACAATTGCAAAACGAAGTGATATGTTGGTGATGTCAAATGAGGGTCCTCTTGGGGCCTATGTAAATCCTGACGGTTATGTACACGAGATAATGACTCTTTACAAAGCCAATGGTTTAGCTCTCATCGGGCCAGCAGTTACAGAATACAGCTGGTTTCCCGGATATGCATGGACAATTGCTATTTGTACCACATGTAGAACCCAAATGGGATGGCTTTTTACAACCACCAACAAAAAACTGAGACCTGCTTCATTTTGGGGTATTCGGAGCTGTCAACTTGCAGAAGAAACACGCCGAAACGTTTAG 1449 0.4362 MDNISDDEIEDEFLYEVEEEFNNPFLHFPPPSPSPSSSSQDQPDAIAIASPAEFTFNTSIASLHTYLGDVEDTRHRTSFLDGGAILNIPLFCLQGVVLFPGATLPLRVTVSRFVTAIERALSQVDVPYTIAVIRVHRETGSFTMKAASIGTTAVIRQYGRLEDGSMNVVSRGQQRFHLRRCWNDVDGVPYGEIQIIEEDLPLRTPRDAFGKSASSCNMLRSRVKMHGLKNRENELANSSDMMDVSASTSDQEIRSNLDSRIGICSTSGKLSSKEELNRCYKNKPSHIISKVFLPHWVYRMYDSYLLAQKAADMWKQIVGVPSMDSLIKKPDVLSFHIASKIPVSESTRQELLDIDGIVYRLRREIELLESIDLVRCKICQTTIAKRSDMLVMSNEGPLGAYVNPDGYVHEIMTLYKANGLALIGPAVTEYSWFPGYAWTIAICTTCRTQMGWLFTTTNKKLRPASFWGIRSCQLAEETRRNV 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04269 482 CDD CRBN_C_like 374 470 IPR034750 -
Vifa2g04269 482 Pfam ATP-dependent protease La (LON) substrate-binding domain 87 369 IPR003111 -
Vifa2g04269 482 MobiDBLite consensus disorder prediction 23 43 - -
Vifa2g04269 482 SMART lon_5 87 370 IPR003111 -
Vifa2g04269 482 ProSiteProfiles CULT domain profile. 371 478 IPR034750 -
Vifa2g04269 482 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 374 464 IPR004910 -
Vifa2g04269 482 ProSiteProfiles Lon N-terminal domain profile. 88 370 IPR003111 -
Vifa2g04269 482 FunFam Lon protease homolog 302 366 - -
Vifa2g04269 482 Gene3D - 302 366 - -
Vifa2g04269 482 PANTHER CEREBLON 46 472 - -
Vifa2g04269 482 Gene3D Peptide methionine sulfoxide reductase. 367 482 - -
Vifa2g04269 482 FunFam Blast:Protein cereblon homolog 367 482 - -
Vifa2g04269 482 Gene3D - 68 196 IPR046336 -
Vifa2g04269 482 SUPERFAMILY PUA domain-like 87 369 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04269 Vifa-Chr2 1253910296 1253913589 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04269 K11793 - gmx:100779918 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04269 2 1253910296 1253913589 Vifa2g04269 2 1253910296 1253913589 ECH