Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04239 ATGGAAGCCACCGAAACCTCTCGGAGCTCCGACAATCCATCCCGCAAGGTCGTTGACATAGCTGCCGGTGAATCACACACTCTCCTTCTTTCCGAAGATGGAAGTGTTTACTCTTGGGGTAGAGGAATGTTTGGACGGCTTGGGCTTGGGTTTGGTTCCCAAAATGATCAACTTTTTCCGGTGAAAGTAAAGTTTGAAAACCCTAGTGGAAGTAGTGACTGTGTCAAAATAGTGGGAATTGCTGCGGGTGCTTATCACAGTCTTGCTCTTGCAGAAGATGGATCTGTTTGGTGCTGGGGTTACAACATCTGTATCCTTAATATCGGAGAGGACTCGCATGATTCCCTGGATCCTTGCTTACTTAGCAGGTTTCTTGAGTTGCAACCGCCTGATTCTTCAACCGGTCTATCTGAAGCAGAAGACAGAGTATCACTAAAGATTTGTACTGTAAAAGCAGGAGGAATGATGTCTCTGGCTATTGATAACCGCGGGACCCTGTGGATATGGGGAAACATCCCAGAAGAAAACAAAGACGGTGGGTTATCTCTTGTAAACAGTTTCATTCCAAGACCAGTCTGGGATTTTCATGGTCGAGCTGTTGTCAAGGTTTCGTGTGGAAACGAGCATGTTGTAGCGCTGGTTAGTGCTACAGAATCACACAAGGATGAAAATCTACTGTGCTACTCTTGGGGTTATAACAGCCATGGTCAATTAGGTTTGGGGGATAGTCAGAGCAGGCTGCGTCCTGAAGTTGTAAAAGTATTCGACGAGGATTCTCCTTTGACGATTTACGAGGTAGCATGTGGTGCATTTCACACGGCTTTGCTAACTCACAAAATGGAATTCAGCGACACATTAGAAAGCATGTGTTGGACCTTTGGCCTTGGCGAAAATGGTCAACTAGGGCATGGAACAACGCGAAGCGCTTTATTTCCTACACCTGTTAAAGTGTTGCCCCAAAATGCTTACTTTATTTCTGTTGACTGTGGCTTGTTTCATACAAGTGTTGTTTCCTCAACTGGGGGTGTGTGGTCCTGGGGAATGGAGAAGGGTCTTGGCTTATGTCCTGACGCCAGTCGTGGTGAAACAGTTTCTGGTGATGCCCTCTCCCCCCTTCTCATCTTATACAAGCCACATCAACCTATTTTTCCAGATCCAGTTAAAGTTGTGTGTGGGGCTGCACACACCGTTGTTATCGTGCAGAAGGGATATAAGGTGTGGTCTTGGGGTAGGGGAAGGAGTGGTGTTCTTGGGAATGGTAAGGAAATTGATAGTTACACTCCTACCATTGTTTTGTGGCCTCCAACAAAGGAGGATCTCAATGACGAGGATTCGAAGAGCTCGGATGAGCAAGATAACGTCGCAGAAAAGAAACCCAAAGTAATAACAGAAACAGATGAGAAACTATCCTCAGCGTTGAATGAGGTGAAGCTGCTTCAAACAAAGCTATCTACAATGGAAAAATATGCCAGTATACTTCACGGCTCTATTTTTGGAAAACCTTTTGATGAACATGATATTCCTGTTTCGATGCGGGATTCGGGTTCCATGAATATTGCCAAAGAATGGGATGACATGTTAGAGGCAGCAGATGATAGGAAGCTAGCTAGGATGGAAATGTTTTACCGCGACATGATAGCTGGTGTGAAAGATAAATTAATGAAAAGAAAGATCAAGGAAATTATAAAGGAATGTCTCCAATCTTCAAATGTAAGTAATAATTAG 1725 0.4446 MEATETSRSSDNPSRKVVDIAAGESHTLLLSEDGSVYSWGRGMFGRLGLGFGSQNDQLFPVKVKFENPSGSSDCVKIVGIAAGAYHSLALAEDGSVWCWGYNICILNIGEDSHDSLDPCLLSRFLELQPPDSSTGLSEAEDRVSLKICTVKAGGMMSLAIDNRGTLWIWGNIPEENKDGGLSLVNSFIPRPVWDFHGRAVVKVSCGNEHVVALVSATESHKDENLLCYSWGYNSHGQLGLGDSQSRLRPEVVKVFDEDSPLTIYEVACGAFHTALLTHKMEFSDTLESMCWTFGLGENGQLGHGTTRSALFPTPVKVLPQNAYFISVDCGLFHTSVVSSTGGVWSWGMEKGLGLCPDASRGETVSGDALSPLLILYKPHQPIFPDPVKVVCGAAHTVVIVQKGYKVWSWGRGRSGVLGNGKEIDSYTPTIVLWPPTKEDLNDEDSKSSDEQDNVAEKKPKVITETDEKLSSALNEVKLLQTKLSTMEKYASILHGSIFGKPFDEHDIPVSMRDSGSMNIAKEWDDMLEAADDRKLARMEMFYRDMIAGVKDKLMKRKIKEIIKECLQSSNVSNN 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04239 574 SUPERFAMILY RCC1/BLIP-II 13 431 IPR009091 -
Vifa2g04239 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 225 279 IPR000408 -
Vifa2g04239 574 Coils Coil 462 482 - -
Vifa2g04239 574 Pfam Regulator of chromosome condensation (RCC1) repeat 341 399 IPR000408 -
Vifa2g04239 574 Pfam Regulator of chromosome condensation (RCC1) repeat 291 336 IPR000408 -
Vifa2g04239 574 Pfam Regulator of chromosome condensation (RCC1) repeat 227 276 IPR000408 -
Vifa2g04239 574 Pfam Regulator of chromosome condensation (RCC1) repeat 33 90 IPR000408 -
Vifa2g04239 574 PRINTS Chromosome condensation regulator RCC1 signature 164 180 IPR000408 -
Vifa2g04239 574 PRINTS Chromosome condensation regulator RCC1 signature 203 219 IPR000408 -
Vifa2g04239 574 PRINTS Chromosome condensation regulator RCC1 signature 399 420 IPR000408 -
Vifa2g04239 574 PRINTS Chromosome condensation regulator RCC1 signature 330 348 IPR000408 -
Vifa2g04239 574 PRINTS Chromosome condensation regulator RCC1 signature 35 51 IPR000408 -
Vifa2g04239 574 MobiDBLite consensus disorder prediction 434 459 - -
Vifa2g04239 574 Gene3D - 3 221 IPR009091 -
Vifa2g04239 574 Gene3D - 222 474 IPR009091 -
Vifa2g04239 574 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 80 90 IPR000408 -
Vifa2g04239 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 288 340 IPR000408 -
Vifa2g04239 574 MobiDBLite consensus disorder prediction 437 459 - -
Vifa2g04239 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 341 402 IPR000408 -
Vifa2g04239 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 164 216 IPR000408 -
Vifa2g04239 574 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 266 276 IPR000408 -
Vifa2g04239 574 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 102 - -
Vifa2g04239 574 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 20 30 IPR000408 -
Vifa2g04239 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 93 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04239 Vifa-Chr2 1245035404 1245038082 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04239 - - gmx:100815199 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04239 2 1245035404 1245038082 Vifa2g04239 2 1245035404 1245038082 ECH