Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04238 ATGGCTCAACTCTTCAGAGACCTATCTTTAGGCCATTCCAAGAGAGAATCAACACCGTCACCGCCGTTAAAGATAATGCCTCCCAAAAAACCACCTACCCTACCCGCCGACGATCTTCCCTCTCCGCTCGGTCAACTTTCCGCCAACCTCTCCGATTCGGAACTCGCCCTAACTGCCTACGAGATCTTCGTTGCCGCGTGCCGGACTTCGTCAGGTAAGCCGCTGAGTTCGTCTATTGCTAACTCGGTTTCGAATAGTCATTCTGGCTCGCCGAGTCAGAACTCGGTAGGTGGTATTCAGCGATCGATAACTTCTACGGCGGCTAGTAAGGTTAAGAAGGCTTTTGGATTGAAATCGCCCGGTTCGGGTAGTAAGAAGAGTCCTGGTTCCGGTTCGGGTTTGGGGAAAGTGAAACGGCCGTTGACGGTTGGGGAGCTTATGAGGAGTCAGATGAGGGTTTCCGAAGGGATGGATTCACGTGTTAGACGTGCGTTGCTCAGGATTTCTGCTGGACAGGTTGGAAGAAGGATCGAGTCTGTGGTGGTTCCGCTTGAGCTAATGCAGCAACTCAAGGCTTCAGATTTTACTGATCAACAAGAGTATGACGAATGGCAGAAGAGGACTCTCAAGGTTCTGGAGGCTGGTTTAATTTTGCATCCTTATATACCTTTGGATAAATCCAACTCTGCTGGGCAGAGGCTACGGCAGATTATTCATGGGGCTTTAGATAGGCCTATTGAAACCGGGAAGAACAATGAGTCCATGCAGGTTCTTCGTAGTGCTGTTATGACTCTTGCAAATAGGTCGTATGATGGATCTCTTACTGATTCATGCCACTGGGCAGATGGGATTCCTTTGAATCTACGGCTTTATGAAATGCTTCTGCAATCCTGCTTTGATGTTAATGATGAATCTTCAATTATTGATGATTTTGATGAGCTAATGGAACAGATTAAGAAGACTTGGGGAATACTTGGGTTAAACCAGACATATCATAATCTCTGTTTTACTTGGGTTTTATTTCATCGATTTGTTGCTACTGGCCAGATGGACTTGGAGCTTCTGTCTGATGCTGATGGCCAGCTAGCTGAAGTTGCAAAAGACGCAAAGACGACAAAAGATTCCGAGTATTCCAAAATTTTGAGTTCGACATTGACTTCAATATTGGGATGGGCAGAGAAAAGGCTTCTTGCATACCATGAAACTTTTGATCGTGGTAATGTTGAAACTATGGAGGGAATAGTCTCTTTAGGGGTAGCAGCGGCTAAGATATTGCTTGAAGACGTATCTACTGAGTATCGCCGGAGGAGAAAAACTGAAGTCAACGTGGCCCGGGAAAGAATTGAAACTTACATTAGGTCATCTCTACGTACTGCCTTTGCCCAGATAATGGAGAAAGCAGACTCAAGCAGGAGGGCATCAAGAAACCAGCCAAATGCTCTCCCTCTCCTTGCCATTCTTGCAAAGGATGTAGGCAGCCTGGCAATGAATGAAAAGCTAGTTTTCAGCCCAATACTCAAAAGATGGCATCCTTTGGCCGCAGGTCTTGCTGTGGCTACCCTTCATGCATGCTATGGGAACGAAATGAAGCAGTTCATTGCAGGTATCACAGAATTGACCCCAGATGCTGTTCAAGTGTTAAGAGCGGCAGACCAGTTGGAGAAAGACCTTGTGCAGATAGCTGTTGAGGACTCAGTCGACAGCGATGATGGTGGCAAAGCAGTAATCCGTGAGATGCCTCCTTACGAGGCTGAAGGTGCAATTGCCAATCTTGTAAAAATATGGATTAAAACTAGAATAGATCGACTAAAAGACTGGGTTGATAGGAATCTTCAGCAAGAGCTTTGGAGTCCACAAGCAAATCAGGAAGGATACGCTCCATCTTCTGTTGAAGTTCTGCGAATCATAAATGAGACTCTGGATGCATTCTTTCAGCTTCCAATACCAATGCATCCTGCATTGCTTCCCGATGTGATGCATGGCCTTGACAGATGCCTTCAATATTATGTTGCTAAGGCCAAATCTGGATGTGGATCACGAAATACATTTATTCCAACAATGCCGGCACTGACGAGATGCACTATTGGCTCAAAATTTCAAGGCTTTGGGAAGAAAAAAGAGAAATCTCCAAATCCTCAGAAGAGAAACTCTCAGGTTGCAACAAATGGGGATAGCTCTTTTGGGGTGCCACAGCTCTGTGTTCGCATGAATACTTTGCAGTGGATCCTGGGTGAATTTGATGTCCTGGAAAAACGAATAATTACTCTTTTACGGAACTCAGAATCTGCTCGTGAAGAAGATTTTTCAAATGGATTACCAAGTAAGTTCGAACTATCTTCAGCCGCATGTCTTGAAGGAATTCAGCAACTCTGTGAGGCTGCAGCCTATAGAATTGTCTTCCATGATCTAAGCCATGTTCTGTGGGATAGTTTGTATGTTGGGGATCCATCATCTTCCAGGATTGATCCATTTCTTCAGGAACTTGAGCGGAACTTAATGTTCATTTCAGACAATGTTAATGAAAAAATTCGCACCCGCATTATTACTGAAATAATGAGAGCTTCTTTTGATGGACTCTTGTTTGTATTGCTCGCTGGAGGTCCCTCTCGTGCTTTTTCCAAGAAGGATTCACAGATCATAGATGATGATTTCAAGTTTCTAAAGGAGTTGTTTTGGGCGAATGGCGATGGCTTACCTTCTGAAATAATAGACAAGTTTGCAACTACCCTAAGGTCTATCCTTCCCCTTTTCAGAACAGACACAGATAGTCTCATTGAGCAGTTTAGACGGTTAACACTTGAAACATATAAATCTTCAGCCAGATCTAGAATTCCATTACCTCCAACTTCTGGACAGTGGAGTCCAACTGAACCAAATACATTATTACGTGTTTTATGCCATAGAAACGATGAATCAGCTTCCAAGTTTCTTAAAAAGACATATGATCTCCCTAAGAAACTTTAA 2964 0.4413 MAQLFRDLSLGHSKRESTPSPPLKIMPPKKPPTLPADDLPSPLGQLSANLSDSELALTAYEIFVAACRTSSGKPLSSSIANSVSNSHSGSPSQNSVGGIQRSITSTAASKVKKAFGLKSPGSGSKKSPGSGSGLGKVKRPLTVGELMRSQMRVSEGMDSRVRRALLRISAGQVGRRIESVVVPLELMQQLKASDFTDQQEYDEWQKRTLKVLEAGLILHPYIPLDKSNSAGQRLRQIIHGALDRPIETGKNNESMQVLRSAVMTLANRSYDGSLTDSCHWADGIPLNLRLYEMLLQSCFDVNDESSIIDDFDELMEQIKKTWGILGLNQTYHNLCFTWVLFHRFVATGQMDLELLSDADGQLAEVAKDAKTTKDSEYSKILSSTLTSILGWAEKRLLAYHETFDRGNVETMEGIVSLGVAAAKILLEDVSTEYRRRRKTEVNVARERIETYIRSSLRTAFAQIMEKADSSRRASRNQPNALPLLAILAKDVGSLAMNEKLVFSPILKRWHPLAAGLAVATLHACYGNEMKQFIAGITELTPDAVQVLRAADQLEKDLVQIAVEDSVDSDDGGKAVIREMPPYEAEGAIANLVKIWIKTRIDRLKDWVDRNLQQELWSPQANQEGYAPSSVEVLRIINETLDAFFQLPIPMHPALLPDVMHGLDRCLQYYVAKAKSGCGSRNTFIPTMPALTRCTIGSKFQGFGKKKEKSPNPQKRNSQVATNGDSSFGVPQLCVRMNTLQWILGEFDVLEKRIITLLRNSESAREEDFSNGLPSKFELSSAACLEGIQQLCEAAAYRIVFHDLSHVLWDSLYVGDPSSSRIDPFLQELERNLMFISDNVNEKIRTRIITEIMRASFDGLLFVLLAGGPSRAFSKKDSQIIDDDFKFLKELFWANGDGLPSEIIDKFATTLRSILPLFRTDTDSLIEQFRRLTLETYKSSARSRIPLPPTSGQWSPTEPNTLLRVLCHRNDESASKFLKKTYDLPKKL 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04238 987 Coils Coil 825 845 - -
Vifa2g04238 987 ProSiteProfiles Munc13-homology domain 2 (MHD2) profile. 818 928 IPR014772 -
Vifa2g04238 987 PANTHER PROTEIN UNC-13 HOMOLOG 32 985 IPR008528 -
Vifa2g04238 987 MobiDBLite consensus disorder prediction 701 723 - -
Vifa2g04238 987 MobiDBLite consensus disorder prediction 1 45 - -
Vifa2g04238 987 ProSiteProfiles Munc13-homology domain 1 (MHD1) profile. 544 687 IPR014770 -
Vifa2g04238 987 MobiDBLite consensus disorder prediction 114 137 - -
Vifa2g04238 987 MobiDBLite consensus disorder prediction 74 99 - -
Vifa2g04238 987 Coils Coil 746 766 - -
Vifa2g04238 987 MobiDBLite consensus disorder prediction 21 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04238 Vifa-Chr2 1244659681 1244663553 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04238 - - gmx:100814675 1673.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04238 2 1244659681 1244663553 Vifa2g04238 2 1244659681 1244663553 ECH