Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04218 ATGGAATTTTATGGAAACAGAACACTCCTCACCTTAATGGACAAAGAAAAACCAGAACAACCAGAATCCCCCAACATTCACCTTCGTCTCCAAATCCAAACTCACAGAGAAACAAATGAACAAGACCTTCAGTTTAGTCCACCAAGACCTTCTATCTTCCCACAATCACCATGGACACTCTCTCATCTTCCATCTCCTCCCCCTTCATTGCTCTACCATTGCATCGCCTCCCTCCATCGCCACGAAGGAAACATCTACTCCATTGCAGCTTCGAAAGGCTTCATCTTTACCGGATCCAACAGTAGTCGAATTCGTGTTTGGAAGCAGCCAGATTGCATGGACAAAGGCTACCTCAAATCAAACTCCGGCGAGGTTCGCGCCATTTTAGCTTATAACAACATGGTTTTCACCACACACAAAGATCACAAAATCAGAATATGGAACTTCAGTGTTTCAGAAAGCTTCAAATCCAAGAAAGTAGCTACTCTTCCAAAGAGAAAAAACAAGTCTCTTCTAAACTTCAACCGAGCAAAAAACAACAACAATGCTCACAATTACAAACACAAAGAAACCATTTCTTGCATGGCTTATTACCATTCAGAAGGGTTGTTATACACTGGCTCTCATGACAGAACTGTAAAAGCTTGGAGAATCTTTGATGGAAAATGCATTGATTCATTTCTAGCACATGGAGATCATGTAAATGCTGTATTGGTGAACCAAGACGATGGTTGTGTTTTCACATGTTCTTCTGATGGATCAGTGAAAATATGGAGAAGGGTATACACAGAAAACTCACACACATTAACAATGACACTAAAGTTTCAGGCTTCACCAGTGAACACACTAGCACTGAGTTCATCCTTCAACCATTGTTTTCTGTATTCAGGAACTTCAGATGGAATGATAAATTTCTGGGAGAAGGAGAGGTTGTGTTATAGGTTCAACCATGGAGGGTTTCTGCAGGGTCATAGATTTGCAGTACTTTGTGTTGTGACAGTAGGGAACAGCATGGTGTTTAGTGGCTCGGAGGATACGACGATACGGGTCTGGAGAAGAGAAGAAGGGAGTTGTTATCATGAATGTTTGGCTGTTTTGGATGGACATAGAGGACCTGTGAGGTGTTTGGCTGCTTGTCTTGAGATGGAAAAGGTTGTTGTTGGGTTTTTGGTTTATAGTGGGAGTTTGGATATGACCTTTAAGGTTTGGAGGATTAAGGTTTTTTGTGAGGATGAGAATGTGTATTTGGATGTTGTTGGTGAAAAGTGTGATGGGAGAGTGAAGAAGATTAGGGAGTATGATATGAGTCCTGTTTTGTCACCTTCTTGGGTTGAGAAGAAACTTCAAGGTAGTAGTCCTTTTCAGTAA 1368 0.4137 MEFYGNRTLLTLMDKEKPEQPESPNIHLRLQIQTHRETNEQDLQFSPPRPSIFPQSPWTLSHLPSPPPSLLYHCIASLHRHEGNIYSIAASKGFIFTGSNSSRIRVWKQPDCMDKGYLKSNSGEVRAILAYNNMVFTTHKDHKIRIWNFSVSESFKSKKVATLPKRKNKSLLNFNRAKNNNNAHNYKHKETISCMAYYHSEGLLYTGSHDRTVKAWRIFDGKCIDSFLAHGDHVNAVLVNQDDGCVFTCSSDGSVKIWRRVYTENSHTLTMTLKFQASPVNTLALSSSFNHCFLYSGTSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCVVTVGNSMVFSGSEDTTIRVWRREEGSCYHECLAVLDGHRGPVRCLAACLEMEKVVVGFLVYSGSLDMTFKVWRIKVFCEDENVYLDVVGEKCDGRVKKIREYDMSPVLSPSWVEKKLQGSSPFQ 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04218 455 Pfam WD domain, G-beta repeat 320 351 IPR001680 GO:0005515
Vifa2g04218 455 Pfam WD domain, G-beta repeat 221 258 IPR001680 GO:0005515
Vifa2g04218 455 Pfam WD domain, G-beta repeat 184 216 IPR001680 GO:0005515
Vifa2g04218 455 Pfam WD domain, G-beta repeat 271 306 IPR001680 GO:0005515
Vifa2g04218 455 Pfam WD domain, G-beta repeat 361 403 IPR001680 GO:0005515
Vifa2g04218 455 Gene3D - 67 170 IPR015943 GO:0005515
Vifa2g04218 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 78 108 IPR001680 GO:0005515
Vifa2g04218 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 361 IPR001680 GO:0005515
Vifa2g04218 455 CDD WD40 74 404 - -
Vifa2g04218 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 185 218 - -
Vifa2g04218 455 SUPERFAMILY WD40 repeat-like 73 406 IPR036322 GO:0005515
Vifa2g04218 455 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 46 407 IPR045182 -
Vifa2g04218 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 258 - -
Vifa2g04218 455 Gene3D - 171 260 IPR015943 GO:0005515
Vifa2g04218 455 Gene3D - 261 407 IPR015943 GO:0005515
Vifa2g04218 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 258 IPR001680 GO:0005515
Vifa2g04218 455 SMART WD40_4 314 352 IPR001680 GO:0005515
Vifa2g04218 455 SMART WD40_4 220 259 IPR001680 GO:0005515
Vifa2g04218 455 SMART WD40_4 359 404 IPR001680 GO:0005515
Vifa2g04218 455 SMART WD40_4 266 307 IPR001680 GO:0005515
Vifa2g04218 455 SMART WD40_4 179 217 IPR001680 GO:0005515
Vifa2g04218 455 SMART WD40_4 71 108 IPR001680 GO:0005515
Vifa2g04218 455 SMART WD40_4 111 148 IPR001680 GO:0005515
Vifa2g04218 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 226 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04218 Vifa-Chr2 1237405644 1237407011 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04218 188 408 Miscellaneous Gene Families AT5G08390 24.107 1.04e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04218 - - gsj:114414206 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04218 2 1237405644 1237407011 Vifa2g04218 2 1237405644 1237407011 ECH