Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04180 ATGGCTCCACCACCATCGCAATCTCAACGATCTCCCTCCCCGTCTCAACCCTCCGGGAAGAGTGAAGTCTCTGATTTAAAATTACAGCTCCGGCAGCTTGCCGGTAGCCGAGCTCCTGGAACCGATGATTCTAAGAGGGATCTTTTCAAGAAGGTGATATCCAACATGACTATAGGTATTGATGTATCGGCTCTTTTCGGGGAGATGGTAATGTGCTCGGCAACATCAGACATTGTTTTGAAAAAAATGTGTTATCTGTATGTTGGAAACTATGCGAAGGTGAATCCTGATCTTGCTTTGTTGACGATTAATTTTCTACAAAGGGATTGTAAGGATCAGGATCCGATGATTCGAGGACTAGCGTTGAGGAGTTTGTGTTCGCTTCGAGTGGCGAACTTGGTGGAGTATTTGGTTGGGCCTTTAGGGTCGGGGTTGAAGGATAATAATAGTTATGTCAGGACGGTGGCAGTTGTTGGGGTTTTGAAACTGTATCATATATCAGCAACGACGTGTATGGATGCGGATTTTCCGGAAACACTGAAGCATTTGATGCTCAATGACCAGGATACTCAGGTAGTTGCAAATTGTTTGTCTGGTTTACAAGAAATTTGGACCTTAGAGTCGACCACTTCAGAGGAAGCAGCCAGGGAGAGAGAAACTCTGCATAGCAAGCCAGTTGTTTATTACTTTCTCAATCGCATTAAGGAATTTAGTGAATGGGCACAATGTCTTGTGATGGAATTAGTGGCCAAGTACATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTCCTTGAAGATAGACTCCAGCATGCAAATGGCGCTGTTGTCTTGGCAACTATAAAAGTATTTCTGCACTTGACTTTGTCTATGGCTGATGTTCATCAGCAGGTATATGAGCGTATCAAAGCCCCTCTCTTGACTCAAGTGAGCTCAGGAAGTCCAGAACAATCTTATGCAATTCTAAGTCACCTGCATCTCTTGGTCATGCGTGCCCCTTATATATTTTCCTCAGACTACAAACACTTCTATTGCCAGTATAATGAACCATCCTATGTCAAAAAGTTGAAGCTTGAAATGCTGACTGCAGTTGCAAATGAAAGTAACACCTACGAGATAGTGACAGAATTATGTGAATATGCTGCAAATGTTGACATCCCAATAGCAAGGGAATCAATTCGAGCTGTTGGAAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGACTTCTACAGTTTCTGGAGATGGAAAAGGACTATGTTACATCTGAAGCTCTGGTGCTTGTGAAAGATCTTCTAAGAAAATATCCTCAATGGAGTCAGGATTGTATTGCGGTTGTTGGGAATATCAGTAGCAACAATGTCCAAGAACCTAAAGCTAAGGCAGCTCTCATATGGATGTTAGGGGAGTATTCTCAGGAGATGCATGATGCTCCGTATGTCCTGGAAAGTTTAATTGAAAATTGGGACGAGGAACATTCTGCCGAGGTTCGCTTACATCTTCTTACTGCAGTAATGAAATGTTTCTTTAAGAGACCCCCCGAGACTCAGAAAGCATTAGGAGCTGCACTGGCTGCTGGTCTTGCTGACTTTCACCAGGATGTTCATGATAGAGCCTTATTTTATTACAGGCTTCTACAATACAATGTATCAGTGGCAGAGAGTGTGGTGAACCCTCCCAAACAAGCAGTTTCAGTATTTGCAGATACTCAGAGCAGTGAAGTTAAAGATCGCATATTTGATGAATTTAACAGTTTGTCTGTTGTATACCAAAAGCCTTCATACATGTTCACCGATAAGGAGCACCGAGGGACATTTGAGTTTTCAGATGAACTTGGAAATCTATCTATTAATGCAGAATCCGGAGATTCTGTTGTTCCTGCTCAGAGAGTGGAGGAAAATGACAAGGATCTGCTTCTAAGTACCACAGAAAAAGATGATGTTAGAGATCCTGGTAGCAATGGTTCTGCCTATAACGCTCCTTCCTATAATGGATCTGCCCCTTCTGCTACTTCACAACCACTTGCAGATTTGGCATTTTCAAGTACAAGCGCAACTGGTCAAGCTCCAGCATCTATCATGGCAATTGATGATCTGTTTGGTTTAGATTTTTCAGTTGGGACTGCAACCACACCGCCACCTCCCCCATTGACCCTCAACCCAAAAGCTGTACTGGATCCTGGCACATTTCAGCAGAAATGGCGTCAACTACCGATATCCTTATCAGAGGAATATTCATTAAGCCCTCTTGGAATTGCATCCTTGACAACTCCCCACGCACTCCTACGGCACATGCAAAGTCATTCGATACAGTGCATTGCATCTGGCGGCCAGGCTCCTAATTTCAAGTTCTTTTTCTTTGCTCAAAAGGCTGAAGAAGCATCTATATATCTTGTGGAGTGTATTATCAACACGTCATCGGCCAAGTCACAAATTAAAATAAAAGCTGATGACCAAAGCTCATCACAGGCATTCTGGACTTTATTCCAATCAGCCTTGTCCAAATTTGGTTTGCCCTGA 2535 0.4272 MAPPPSQSQRSPSPSQPSGKSEVSDLKLQLRQLAGSRAPGTDDSKRDLFKKVISNMTIGIDVSALFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDQDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNSYVRTVAVVGVLKLYHISATTCMDADFPETLKHLMLNDQDTQVVANCLSGLQEIWTLESTTSEEAARERETLHSKPVVYYFLNRIKEFSEWAQCLVMELVAKYIPSDNSEIFDIMNLLEDRLQHANGAVVLATIKVFLHLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAILSHLHLLVMRAPYIFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTSEALVLVKDLLRKYPQWSQDCIAVVGNISSNNVQEPKAKAALIWMLGEYSQEMHDAPYVLESLIENWDEEHSAEVRLHLLTAVMKCFFKRPPETQKALGAALAAGLADFHQDVHDRALFYYRLLQYNVSVAESVVNPPKQAVSVFADTQSSEVKDRIFDEFNSLSVVYQKPSYMFTDKEHRGTFEFSDELGNLSINAESGDSVVPAQRVEENDKDLLLSTTEKDDVRDPGSNGSAYNAPSYNGSAPSATSQPLADLAFSSTSATGQAPASIMAIDDLFGLDFSVGTATTPPPPPLTLNPKAVLDPGTFQQKWRQLPISLSEEYSLSPLGIASLTTPHALLRHMQSHSIQCIASGGQAPNFKFFFFAQKAEEASIYLVECIINTSSAKSQIKIKADDQSSSQAFWTLFQSALSKFGLP 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04180 844 MobiDBLite consensus disorder prediction 660 676 - -
Vifa2g04180 844 MobiDBLite consensus disorder prediction 637 676 - -
Vifa2g04180 844 Pfam Beta2-adaptin appendage, C-terminal sub-domain 725 838 IPR015151 GO:0006886|GO:0016192|GO:0030131
Vifa2g04180 844 PIRSF Beta_adaptin 11 844 IPR016342 GO:0015031|GO:0030276
Vifa2g04180 844 FunFam Beta-adaptin-like protein 713 842 - -
Vifa2g04180 844 Gene3D - 713 842 IPR012295 -
Vifa2g04180 844 MobiDBLite consensus disorder prediction 1 24 - -
Vifa2g04180 844 SUPERFAMILY ARM repeat 29 599 IPR016024 -
Vifa2g04180 844 Pfam Adaptin N terminal region 40 552 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vifa2g04180 844 Gene3D - 15 610 IPR011989 -
Vifa2g04180 844 FunFam Beta-adaptin-like protein A 13 609 - -
Vifa2g04180 844 SMART B2_adapt_app_C_2 722 839 IPR015151 GO:0006886|GO:0016192|GO:0030131
Vifa2g04180 844 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 16 809 IPR026739 GO:0016192
Vifa2g04180 844 MobiDBLite consensus disorder prediction 637 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04180 Vifa-Chr2 1225725116 1225734254 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04180 - - gmx:100801153 1508.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04180 2 1225725116 1225734254 Vifa2g04180 2 1225725116 1225734254 ECH