Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04179 ATGTCTTTCCTTCATCTCCCAAGGTTATCCTCTCCCTCATTCTCTCGCCAAGCCTCACGCACCTTCACCGCGCTATTACACCCACCACCAAAATCCACTCTCACAGACACAAACACAAATCCACAACCAAACCAACTCTCCATTCAAACCCCTAAACCCCAAACCCTCCCTCTCGAAAAACTCTTCGTTCCTCCAAACACCCATCTCACTCACGAAAACGCAAGAATCCTAAAAGGTTCCAATATATTACTCAGCAATTACGCCACTGATGCGAAAATTATACAAGCCGATTTTGTTAAAAGCAGCCCCGGAACTGGAGATTGTCCGTCTGATGGTCTTCCTGAGTTCGCGCTTGTTGGGAGGTCCAATGTCGGGAAATCGTCGCTTCTTAATTCTATTGTGCGGCGAAAGAATCTTGCTTTGACTTCGAAGAAACCTGGGAAGACGCAATTGATTAACCATTTTCGAGTTAATGATAGTTGGTACTTGGTTGATTTGCCTGGTTATGGGTATGCATCTGCGCCTCATGAACTTAGAATGGATTGGGCAAAGTTCACCAAAGACTTTTTACTGAACCGGTCAACATTAGTTTCGGTTTTCCTTCTAATAGATGCTAGCATTCCTGCTAAAAAAATTGATCTTGAGTATGCCAGATGGTTGGGTGAAAATCAGATCCCAATGACATTAATCTTTACCAAATGCGACAAACGGAAGAAGACAAAGAACGGAGGCAAAAGGCCTGAAGATAATGTCAATGACTTTCAGGAGTTGATTCGCAGCTCCTTCGAAACTGTGCCTCCATGGATCATGACCAGTAATGTAACCCATCAGGGTCGTGATGAGATTCTCCTTCATATGGCCCAACTTCGGAACTACTGGCTCAAGCACTAG 891 0.4444 MSFLHLPRLSSPSFSRQASRTFTALLHPPPKSTLTDTNTNPQPNQLSIQTPKPQTLPLEKLFVPPNTHLTHENARILKGSNILLSNYATDAKIIQADFVKSSPGTGDCPSDGLPEFALVGRSNVGKSSLLNSIVRRKNLALTSKKPGKTQLINHFRVNDSWYLVDLPGYGYASAPHELRMDWAKFTKDFLLNRSTLVSVFLLIDASIPAKKIDLEYARWLGENQIPMTLIFTKCDKRKKTKNGGKRPEDNVNDFQELIRSSFETVPPWIMTSNVTHQGRDEILLHMAQLRNYWLKH 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04179 296 Pfam 50S ribosome-binding GTPase 116 233 IPR006073 GO:0005525
Vifa2g04179 296 PANTHER MSS1/TRME-RELATED GTP-BINDING PROTEIN 16 296 - -
Vifa2g04179 296 CDD YihA_EngB 115 289 IPR030393 GO:0005525
Vifa2g04179 296 NCBIfam ribosome biogenesis GTP-binding protein YihA/YsxC 96 284 IPR019987 GO:0005525
Vifa2g04179 296 MobiDBLite consensus disorder prediction 26 52 - -
Vifa2g04179 296 ProSiteProfiles EngB-type guanine nucleotide-binding (G) domain profile. 112 292 IPR030393 GO:0005525
Vifa2g04179 296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 292 IPR027417 -
Vifa2g04179 296 Hamap Probable GTP-binding protein EngB [engB]. 101 290 IPR019987 GO:0005525
Vifa2g04179 296 Gene3D - 88 292 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04179 Vifa-Chr2 1225351992 1225354254 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04179 K03978 - gmx:100784426 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04179 2 1225351992 1225354254 Vifa2g04179 2 1225351992 1225354254 ECH