Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04175 ATGGGTTGTGCACAATCCAGAATAGACAATGAAGAATCAGTTGCACGATGCAAAGAACGGAAGAATTTAATGAGAGAAGCCGTTGTTGCTCGTAACGCCTTCGCTGCCGGTCATTCCGGTTATGCTATGGCTCTCAAGAACACCGGTGCCGCTCTTTCCGACTACTCTCACGGTGAAACTCATGTAGATGAAATTGAACTTCACCCGCCGCCGATGCATAGTTCATCTAACCCGCCTCCTCCACCGCCACCTCCACCGCCGCCTCCACCGCATATGGAAGAGAATCTCCCTCCACCACCGCCTCTTCCGCCTAATTTCTCTCCTGCGTCGCTCAAACGCGCTGTCACATTGCCGCCTGTGCCTTTGCAGCACCGTAAACCTAGCGGCGGAGTCTCCATTGTTGAAGAGATGGAGAAAAACGCGAAAATCGAGGTAGAGGGAGAAAGAGAGAAAGATGGTGACGGTGATGGATTGGTTCACGCTCCGCCTTCTCCGCCAGGAGGTAAAGTGATGCCGCCGCCGCCTCTGCCAGAATCGAAAAACATGGCGTGGGATTATTTCTTCATGGATATGAACATGGCAAGAGCTTCTTTGAATGAGGAAGATGAGATTGAGAATGATGCAGGCGAAATTGAAATTGAAGATGAGAATGTTGTTGATAATGGAGGACACGTGGAAGATGAGATTGAACCGAAGACGCCGGAGAAAGTGGAGGTTGATGTGTATACTAAGGAACATGAGCATGGACATGTTCATGTTCATGATCATGAGGGTGATGATGTGATAAGAGAGGCTAAACACATTGAACATTCTAAAACTGTTCCGGCTGAATTTAGAAGAGCAATTAAGTTGGTTCCCACCGTTACGCTCATGCAGATTCTTAGTTCTCTTGATGATCATTTTCTTAAAGCTTCTGAGACTGCCCAAGAAGTTTCCAAGATGCTTGAAGCTACTAGATTGCATTATCATTCTAATTTTGCCGATAATCGGGGTCACATTGATCATTCGGCTAGAGTCATGAAAGTGATAACATGGAATAGGTCCTTCAAGGGTGTGTCGAACGGGGAGGGTGCTAAAGATGATTTTGATTCGGAAGAGTATGAAACACATGCCACTGTTTTGGACAAGTTGTTAGCTTGGGAAAAGAAACTCTATGAAGAGGTCAAGCAAGGTGAGCTTATGAAGTTTGAATATCAAAGAAAAGTTTCAGTTCTAAACAAGCAGAAGAAGCGTGGTGCCAGTGTTGATTCTTTAGGAAAAACTAAAGCGGCCGTAAGTCATCTACACACAAGATATATTGTTGATATGCAGTCGATGGATTCAACAGTTTCAGAAGTGAACCATATTCGCGATGCTCAGTTGTATCCCAAGCTTGTTGCTCTTGTTATTGAGATGACCAATATGTGGGAGAGTATGTTCATGCATCATGACAGTCAGCTGAAAATAGTAACAGACCTCAAATCTCTTGATATTTCTCAAGATCAGAAGGAAACAACCAAGCATCATTATGACCGTACCATACAGCTTTGGAATGTAATCCAAGAATGGCAGTCACAATTTGAGAAGCTCGTGACTCAGCAGAAGCATTACATTCAAGCTCTTAATAACTGGCTCAAGTTAAATCTCATTCCCATCGAAAGCAACCTAAAAGAGAAAGTCTCGTCCCCGCCAAGAGCACATAATCCACCAATTCAAACCCTTCTCCATGCATGGCACGATTACCTTGACAAGCTTCCCGATGAACTAGCGAAATCTGCTATTTCCTCATTTGCTGCTGTGATAAAAACGATCATACTTCAGCAGGAGGAAGAGATGAAGTTAAAGGAGAAATGTGAGGAAATTCAAAAGGAATTCTTGAAGAAAAACCAAGCTTTTCAGGATTGGTACCAAAAGCATTTACAAAAAATGGGGCCAGAAGATGGAGAGGAAGGAAATACGAACAATCCGGTTTCGGAGAAACAGTTTGTTGTTGAGAGCTTGAAGAAGAGATTAGAAGAAGAAACTGAATCTCACAAAAAAATATGTGTTCAGGTAAGAGAGAAGTCACTCCAGAGTCTCAAAACTCGTCTGCCTGAGCTCTTCCGCGCGCTATCGGACTATACTCATGCATGTTCTGATGCTTATAACAAGCTGAAGTCAATTGCACAATCTCAAGGTGGCGGTGCAGCGTGA 2172 0.4401 MGCAQSRIDNEESVARCKERKNLMREAVVARNAFAAGHSGYAMALKNTGAALSDYSHGETHVDEIELHPPPMHSSSNPPPPPPPPPPPPPHMEENLPPPPPLPPNFSPASLKRAVTLPPVPLQHRKPSGGVSIVEEMEKNAKIEVEGEREKDGDGDGLVHAPPSPPGGKVMPPPPLPESKNMAWDYFFMDMNMARASLNEEDEIENDAGEIEIEDENVVDNGGHVEDEIEPKTPEKVEVDVYTKEHEHGHVHVHDHEGDDVIREAKHIEHSKTVPAEFRRAIKLVPTVTLMQILSSLDDHFLKASETAQEVSKMLEATRLHYHSNFADNRGHIDHSARVMKVITWNRSFKGVSNGEGAKDDFDSEEYETHATVLDKLLAWEKKLYEEVKQGELMKFEYQRKVSVLNKQKKRGASVDSLGKTKAAVSHLHTRYIVDMQSMDSTVSEVNHIRDAQLYPKLVALVIEMTNMWESMFMHHDSQLKIVTDLKSLDISQDQKETTKHHYDRTIQLWNVIQEWQSQFEKLVTQQKHYIQALNNWLKLNLIPIESNLKEKVSSPPRAHNPPIQTLLHAWHDYLDKLPDELAKSAISSFAAVIKTIILQQEEEMKLKEKCEEIQKEFLKKNQAFQDWYQKHLQKMGPEDGEEGNTNNPVSEKQFVVESLKKRLEEETESHKKICVQVREKSLQSLKTRLPELFRALSDYTHACSDAYNKLKSIAQSQGGGAA 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04175 723 SUPERFAMILY Formin homology 2 domain (FH2 domain) 80 185 - -
Vifa2g04175 723 Pfam Protein of unknown function (DUF630) 1 59 IPR006868 -
Vifa2g04175 723 MobiDBLite consensus disorder prediction 65 111 - -
Vifa2g04175 723 PANTHER UNCHARACTERIZED 1 716 - -
Vifa2g04175 723 Coils Coil 661 681 - -
Vifa2g04175 723 MobiDBLite consensus disorder prediction 144 177 - -
Vifa2g04175 723 Pfam Protein of unknown function (DUF632) 290 595 IPR006867 -
Vifa2g04175 723 MobiDBLite consensus disorder prediction 72 107 - -
Vifa2g04175 723 Coils Coil 597 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04175 Vifa-Chr2 1221674845 1221677677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04175 1 83 Acyl Lipid Metabolism Gene Families AT2G27090 33.735 1.09e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04175 - - gmx:100807189 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04175 2 1221674845 1221677677 Vifa2g04175 2 1221674845 1221677677 ECH