Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04166 ATGGGTCTAACAGAAGCATGTTCCAAATTCATAGTTGAATTTTTACAAGCATTCAAAAACTCATCACGAAGCTCAATGCCTAATCACAATCACCATGATCAAGAGAATATTCTCAAGCTTGACGAAAGGATGGTTCGAGCTCTTGTTACCGTCTTTGGAATGGAAACAAATGGAAGAATCAAGAAGGAAAATGCTAGGCAAGTTGTGGAAAAGCTTGGTTTGATCTATGGTTGTGATCAGAAGGATAACAAGGTCTTTCAAGACGAAGACGACGATGAAGAAGTGGTTGTGGAAGAAGTGCTTGGTGAATTGGAAGACATGTCATTAAAGAGAAGTGAGTTATTGGTTGAAGCTTTCAAAATATTTGATGAGGATGGCGATGGATATATAGATGCAATGGAATTGAAGAGAGTGCTTGATTGTTTGGGTTTGGATAAAGGTTGGGATATGAACACAATTGAAAGGATGGTTAAGGTTGTGGATTTGAACTTTGATGGAAAAGTTGATTTTGGTGAGTTTGAATTGATGATGGGATAG 537 0.378 MGLTEACSKFIVEFLQAFKNSSRSSMPNHNHHDQENILKLDERMVRALVTVFGMETNGRIKKENARQVVEKLGLIYGCDQKDNKVFQDEDDDEEVVVEEVLGELEDMSLKRSELLVEAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMNTIERMVKVVDLNFDGKVDFGEFELMMG 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04166 178 Gene3D - 32 178 - -
Vifa2g04166 178 ProSiteProfiles EF-hand calcium-binding domain profile. 148 178 IPR002048 GO:0005509
Vifa2g04166 178 ProSiteProfiles EF-hand calcium-binding domain profile. 110 145 IPR002048 GO:0005509
Vifa2g04166 178 CDD EFh 115 173 IPR002048 GO:0005509
Vifa2g04166 178 Pfam EF-hand domain pair 115 177 IPR002048 GO:0005509
Vifa2g04166 178 PANTHER CALCIUM BINDING PROTEIN 112 177 - -
Vifa2g04166 178 FunFam Calmodulin A 103 178 - -
Vifa2g04166 178 SUPERFAMILY EF-hand 43 177 IPR011992 -
Vifa2g04166 178 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Vifa2g04166 178 SMART efh_1 114 142 IPR002048 GO:0005509
Vifa2g04166 178 SMART efh_1 152 178 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04166 Vifa-Chr2 1218300710 1218301246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04166 115 177 EF-hand Containing Proteins AT4G20780 57.143 4.16e-17 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04166 - - gmx:100527700 239.58