Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04163 ATGTCTTCATCATATCTTCCGGCCACAACAGAGTCAATTGCTCAGGCATTGGAGGCCAAAGACCATTCCGATTCAATCTCCATTCTATATCGCGTGCTTGATGATCCATCTTCTTCACCAGAAGCTCTGCGGATGAAAGAGCAGGCCATCACAAACCTTACTGACCTTCTCAGGCAAGAGAACCGGGGAGAGGATCTGCGGAGCCTTCTCACTTCATTGAGGCCCTTCTTCTCCTTGATTCCCAAGGCAAAAACTGCAAAGATTGTAAGGGGAATAATTGACTCGGTTGCTAAAATACCAGGGACATCTGATCTACAAATTTCACTCTGTAAGGAAATGGTGCAATGGACTCGTGACGAAAAGCGAACTTTTCTGAGGCAACGAGTTGAGGCAAGGCTTGCAGCGCTTCTGATGGAAACTAAGGAGTATTCAGAAGCTTTGACTCTTCTTTCTGGGTTGGTCAAAGAGGTTAGGCGATTAGATGACAAGCTGCTTCTTGTAGACATCGACTTGTTGGAAAGCAAGCTGCACTTCTCGTTAAGAAACCTTCCAAAGGCAAAAGCTGCCCTCACGGCTGCGAGAACAGCTGCGAACGCCATTTATGTTCCTCCTGCTCAGCAAGGGGCCATAGATCTTCAGAGTGGAATACTTCATGCCGAGGAGAAGGATTACAAAACTGGATACAGCTATTTCTTTGAAGCCTTTGAGTCTTTCAATGCCCTTGAAGACCCTAAGGCTGTTTTTAGCTTGAAATATATGTTGTTGTGTAAGATCATGGTGAATCAAGCCGATGATGTGGGTGGAATTATATCTTCTAAAGCAGGATTGCAATATGTTGGACCTGACTTAGATGCTATGAAAGCTGTTGCTGATGCACATTCTAAGCGATCCCTGAAGTTATTTGAATCCGCTTTGCAGGACTACAAGGCACAGTTGGAAGAAGACCCAATAGTTCACAGGCATCTTTCTTCCCTATATGATACCCTTCTGGAGCAGAACCTCTGTAGATTGATTGAGCCATTCTCAAGAGTTGAGATTGCACATATTGCTGAGCTTATTGAGCTTCCCATTGATCATGTTGAGCGGAAGATGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGGACCTTGGATCAAGGGGCTGGATGCCTCATCATATTCGACGATCCCAAGACAGATGCAATATATCCAGCCACTTTAGAGACCATTTCCAATGTCGGGAAAGTCGTTGACAGTCTTTATGTTAGGTCTGCCAAGATCATGGCATGA 1269 0.4492 MSSSYLPATTESIAQALEAKDHSDSISILYRVLDDPSSSPEALRMKEQAITNLTDLLRQENRGEDLRSLLTSLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQISLCKEMVQWTRDEKRTFLRQRVEARLAALLMETKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTGYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVNQADDVGGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFESALQDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIDHVERKMSQMILDKKFAGTLDQGAGCLIIFDDPKTDAIYPATLETISNVGKVVDSLYVRSAKIMA 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04163 422 Pfam PCI domain 285 386 IPR000717 -
Vifa2g04163 422 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 14 128 IPR040773 -
Vifa2g04163 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 29 418 - -
Vifa2g04163 422 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 393 418 IPR040780 -
Vifa2g04163 422 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 403 IPR000717 -
Vifa2g04163 422 SMART PCI/PINT associated module 143 319 - -
Vifa2g04163 422 Gene3D - 46 421 - -
Vifa2g04163 422 SUPERFAMILY "Winged helix" DNA-binding domain 314 396 IPR036390 -
Vifa2g04163 422 ProSiteProfiles PCI domain profile. 223 391 IPR000717 -
Vifa2g04163 422 FunFam 26S proteasome non-ATPase regulatory subunit 11 46 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04163 Vifa-Chr2 1216656719 1216657987 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04163 K03036 - gmx:100796188 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04163 2 1216656719 1216657987 Vifa2g04163 2 1216656719 1216657987 ECH