Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04121 ATGGAACCATCTTCGTCATCGGCGATCGCACAACAAACATGGGAGTTAGAAAACAACATAATCCCCATGGAAACTCCCGCTGCCGACGATTCGATTTTCCACTACGACGAAGCGGGACAGAGCGAGTTTCAGCGTGATAAACCCTGGGCAAACGACCCTCACTACTTCAAGCGCGTCAAGATCTCTGCACTCGCGCTACTCAAGATGGTTGTTCACGCGCGCTCCGGTGGTACCATCGAGGTTATGGGTCTCATGCAAGGTAAAACTGATGCTGATTCGATCATCGTAATGGATGCTTTCGCGTTGCCGGTTGAAGGTACTGAAACTCGTGTCAATGCTCAAGCTGATGCGTATGAATACATGGTTGATTATTCTCAGACCAATAAACAGGCTGGAAGGTTGGAGAATGTTGTGGGGTGGTATCATTCTCATCCTGGCTATGGATGTTGGCTTTCTGGGATTGATGTTTCGACGCAGATGTTGAATCAGCAATTTCAGGAGCCGTTTTTGGCGGTTGTGATTGATCCGACGAGGACTGTTTCTGCTGGGAAAGTTGAGATTGGGGCTTTCAGGACTTACCCGGAAGGTTTTAAGCCTGCGGATGATCCTATTTCGGAGTATCAAACTATACCGCTTAATAAAATTGAGGATTTTGGTGTCCATTGTAAACAGTACTATTCTTTGGATATCACTTACTTTAAGTCTAGTCTTGATTCACACCTTTTGGATCTCCTGTGGAACAAATATTGGGTGAATACACTGTCATCTTCTCCTTTATTGGGCAATGGAGACTATGTAGCTGGACAAATCTCAGATTTAGCTGAAAAGCTAGAACAAGCAGAGAATCAATTGGCACACTCACGTTTCGGGCCACTAGTAGCACCTTCACCTAGAAAGAAAGAAGAAGAATCCCCACTCGCTAAGATCACTCGGGATAGTGCGAAGATAACGGTGGAGCAAGTGCATGGTTTAATGTCTCAGGTAATAAAGGACACTCTGTTCAACTCTGTTCATCAAGCAAACAAGTCTTGTACAGAAACCTCTGATCCTGAACCAATGATTGAAAGCTGA 1071 0.4519 MEPSSSSAIAQQTWELENNIIPMETPAADDSIFHYDEAGQSEFQRDKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDADSIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGFKPADDPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLVAPSPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDTLFNSVHQANKSCTETSDPEPMIES 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04121 356 Gene3D Cytidine Deaminase, domain 2 3 261 - -
Vifa2g04121 356 SUPERFAMILY JAB1/MPN domain 58 194 - -
Vifa2g04121 356 Pfam Cop9 signalosome subunit 5 C-terminal domain 255 335 IPR040961 -
Vifa2g04121 356 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 56 167 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vifa2g04121 356 MobiDBLite consensus disorder prediction 288 308 - -
Vifa2g04121 356 ProSiteProfiles MPN domain profile. 59 196 IPR037518 -
Vifa2g04121 356 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 46 342 - -
Vifa2g04121 356 SMART pad1_6 58 195 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vifa2g04121 356 CDD MPN_RPN11_CSN5 48 320 - -
Vifa2g04121 356 FunFam COP9 signalosome complex subunit 5 4 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04121 Vifa-Chr2 1203536447 1203539946 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04121 K09613 - gmx:100784909 674.47