Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04094 ATGGCCATTTCCCTCTTCACTACACGTCCATTTCTTTCCCCAACAACCACCATATTCACTCTATCAACAATCCTCACAAATTCAACTACACGATATCACTTCTCAACCATCACCATGAACTCCACCACCACCACCACCTCAGCAGCATCTTCTTCCTCATTGCAGCATGTACCGGAGCAAGACTCTAACGAAATGCAACGCTTTGCGAACGTAACGTTTCAAAGGTACACTTCCAATAGCACCAAGAGGAATGGCAATGGTACAGCAATCGTCTGGTTTAGAAATGATCTCAGAGTCTTGGATAATGAGGCTCTCTACAAAGCTTGGCTTTCTTCTCAAACTATCTTGCCTGTTTACTGTGTTGATCCTCGACTCTTTGCCACTACTTACCATTTCGGATTTCAAAAAACCGGAGCATTGAGAGCACAGTTTTTAGTAGAATGTTTGGCTGACTTGAGGAAGAATCTAATGAATCGGGGACTTAATTTGCTTATTCAACTTGGGAAGCCTGAAGATGTTATTCCTTCTCTAGCTAAAGCTTATGGAGCTCATACAGTTTATGCACAGAAAGAAACTTGCAGTGAGGAGTTGAATGTTGAAAGGTCTGTCAGCAGATGTCTTCAGCAAGTGGGGGAACCATCTGATGAATCTGTTGGGGGTGCAAGAAGTTTAAATAACCACCCCAAGTTAGAGTTTGTTTGGGGAACCACCATGTACCACCGAGATGATCTTCCGTTTGATGTCACTTGTTTGCCGGATGTTTATACTCAATTTCGTAAGACTGTCGAAGCCAAATGTGCCGTGCGCTCATCCATCAAACTGCCAGCATCACTTGGACCACCTGCCCCTGTTGAGGATTGGGGAAGTATTCCTTCAATGGAGCAGCTGGGACTTTGCTCACAGAATGTTAGCAAGGGGATGAAATTTGTGGGGGGTGAAACTGCCGGATTGAGCAGAATATATGACTACTTTTGGAAGAAGGATTTACTGAAGGTATACAAAGAGACTCGAAATGGGATGTTAGGGTCTGATTATTCTACTAAATTCTCACCATGGCTTGCATCAGGAAGCTTGTCACCTCGTCTCATACACGATGAGGTGAAGAGATATGAGAATGAAAGACAAGCAAACAGTTCTACCTACTGGGTTTTGTTCGAGTTGATATGGAGAGATTATTTTCGATTTCTATCAGTCAAATATGGAAATTCACTTTTCCATATAGGTGGACCGAGGAATGTTCAGCGTAATTGGAGCCAAGACAAGAAACTATTTGAATCCTGGAGAGATGGTTGTACAGGGTATCCTCTGATAGATGCTAACATGAAAGAACTATCAACTACAGGTTTCATGTCAAACCGTGGACGGCAGATTGTGTGTTCCTTCCTAGTTCGTGACATGGGCATAGATTGGCGCATGGGTGCCGAATGGTTTGAAACATGTCTTTTGGATTATGATCCATGTTCTAATTATGGGAACTGGACTTACGGATCAGGAGTTGGGAACGATCCTCGGGAAGATCGTTATTTCAGCGTTCCGAAACAAGCACAAACATATGACTCAGAAGGCGAATATGTTGCATACTGGTTGCCACAGTTACTAACAATCCCAAGAGAAAAAAGGAACTTTCCTGGTAGTTTATACATTCGTCAAGTTGTGCCTCTCAAGTTTGGAACAACTGGGAGACACAATAAGGATGAGACTTCACTTGGTGGAGCAAGAAGAAGATATGATCGAAGATGGAATAGGAATTAA 1752 0.4292 MAISLFTTRPFLSPTTTIFTLSTILTNSTTRYHFSTITMNSTTTTTSAASSSSLQHVPEQDSNEMQRFANVTFQRYTSNSTKRNGNGTAIVWFRNDLRVLDNEALYKAWLSSQTILPVYCVDPRLFATTYHFGFQKTGALRAQFLVECLADLRKNLMNRGLNLLIQLGKPEDVIPSLAKAYGAHTVYAQKETCSEELNVERSVSRCLQQVGEPSDESVGGARSLNNHPKLEFVWGTTMYHRDDLPFDVTCLPDVYTQFRKTVEAKCAVRSSIKLPASLGPPAPVEDWGSIPSMEQLGLCSQNVSKGMKFVGGETAGLSRIYDYFWKKDLLKVYKETRNGMLGSDYSTKFSPWLASGSLSPRLIHDEVKRYENERQANSSTYWVLFELIWRDYFRFLSVKYGNSLFHIGGPRNVQRNWSQDKKLFESWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSVPKQAQTYDSEGEYVAYWLPQLLTIPREKRNFPGSLYIRQVVPLKFGTTGRHNKDETSLGGARRRYDRRWNRN 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04094 583 PANTHER CRYPTOCHROME 88 543 IPR002081 -
Vifa2g04094 583 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 87 222 IPR006050 -
Vifa2g04094 583 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 86 284 IPR036155 -
Vifa2g04094 583 NCBIfam DASH family cryptochrome 88 531 IPR014133 GO:0003913|GO:0006281
Vifa2g04094 583 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 307 540 IPR036134 -
Vifa2g04094 583 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 406 560 - -
Vifa2g04094 583 Pfam FAD binding domain of DNA photolyase 385 539 IPR005101 -
Vifa2g04094 583 Pfam DNA photolyase 89 272 IPR006050 -
Vifa2g04094 583 Gene3D HUPs 51 235 IPR014729 -
Vifa2g04094 583 Gene3D - 236 405 - -
Vifa2g04094 583 PRINTS DNA photolyase signature 452 470 IPR002081 -
Vifa2g04094 583 PRINTS DNA photolyase signature 491 505 IPR002081 -
Vifa2g04094 583 PRINTS DNA photolyase signature 432 448 IPR002081 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04094 Vifa-Chr2 1197318420 1197321704 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04094 K25656 - gmx:100783312 906.746