Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04092 ATGAGTAGACCGATAACCCGGAGTAAAAATAAAAAACTAAAACAGGATGATGATGGTGTCTGTACGAGTGAAATTTGGAGGAAAATTCACGAAACCGGCGTGGTTACTGAGGATGATATTAATCAATTATATATGATTTATAAACCGGTTTGTTCAGGCTGCCGTGTCAATACGAAAGATAATCCGAATTGCTTTTGTGCATTGGTTCCACCTTTAAATGGAGCTAGGAAGTCTGGCTTATGGGAGAAGGTGTCGGATTTTGTTGAAAGTCTTGGTCCTGATCCGAACAAGGATCTTCGTGCTTCGGATGATTCTCCTGCAGGTTTAACCAATCTCGGGGCAACGTGTTATGCTAATGGAATACTACAATGTTTGTACATGAATAAGTTATTTCGAGAAGGGATGTTTTCTGTGGAACCGGATGTTTTAAGGGAACAGCCGGTGTTAGATCAATTGGCAAGACTTTTTGCGCAGTTGCAAGGTAGTAAATTGGCTTTTGTAGATTCTTCTCCGTTTGTGAAGACACTGGAGTTAGATAATGGAGTTCAGCAGGATAGCCATGAATTCTTGACGTTGTTTTTGTCCTTGCTTGAGCGTTGTCTGAGTCATTCCAAAGTTCCCAAGGCGAGAACAATAGTTCAAGATCTTTTCCGCGGAAGTGTGTCTCATGTGACAACGTGCTCGCAATGTGGAAGAGATTCTGAAGCTTCATCCAAAACAGAAGATTTCTATGAGTTGGAGTTGAATGTCAAGGGGTTGAAAAGTTTAGATGAGAGCCTGGATGATTACCTAACTGTTGAAGAGCTTCATGGAGACAATCAATATTTTTGTGAGTCATGCAACACAAGAGTTGATGCTACTCGCAGCATCAAGCTGTGTACCCTACCTGATGTACTTAATTTTCAACTTAAACGTTGTGTCTTTCTTCCAAAGACTACTACAAAAAAGAAAATTACTTCTGCATTTTCATTTCCTGTGCAACTTGATATGCGGCATAGACTGCATGAGTTGTGTCAGTTTGATTTGGTATATGACTTGTCAGCTGTACTGATTCACAAGGGAAGCGGTGTTAATAGTGGCCATTACATCGCTCACATCAAGGACAAAAATACGGGGCAGTGGTGGGAATTTGATGATGAATGCGTTACTAATTTAGGTAACCATCCATTTGGCGAAGGATCTTCTAGTTCTACTACTAAATCCGTTGCAACCGATGCAACTCACTCTGACTGCTCTGAAGCAAGGATAGCTGAAAGTAATGGAAACGGTTTAAACACCACTCATTCACAATCTTCACTTGTGGAGACATTTTCTTCTTGTGACGCTTACATGTTGATGTACCATCTTAAACAAACAAAAAATATAAGTGAAAATGGGGGTATAGTTTGTGGTGCTAACCATAGAGAAATAGAGGGCGTTGTAGCTAGTGCACGAGACGGCGTTTCTCTTCCTTCTCATCTTTATGATGAAATTCAAAATTTTAATGCCTCATATCTTGATGCTTGTCAACAATACAGTCATGGGAAAGAGTTAGAGTTGAATCGTATTACTGATAGGAGACAAGAAGTTCGATCTGTGTTGGCTGAAGCTCCTGTTCCACCATTAGAGCGACCATTTTATTGGATTTCTAGTGATTGGCTTCGCCAGTGGGCTGACAACATTATTCCAACTTCTATTGACAACACAGTCATCCAATGTTTACATGGGAAAGTCCCGATTTCAAAGGTTACTTCAATAAAGCGACTGTCTGCCAAAGCATGGGATAAGTTGTTTTCCAAGTATGGTGGGATGCCAACACTGTCTCATGATGATCATTGTCGGGATTGTCTGATACACGGGGCTCAGACAGTGGTATCAGCTGACTCCTATCGGGGTAGAAGAGAATCATTGAAGTCACTTGCACGGGATGTTCTTGATGGGAGTTGTCCAGATGGAAAGTATTTCATATCCAGATCATGGTTGCAGCAGTGGTGGAAAAGAAAAGTCCTTGATGCTCCTTCCGAAGCTGATGCTGGACTAACAGTGGCTATTAGTTGTCCACATGGTTTATTGATGCCTGAGCAAGCTCCTGGTGCTAAACGGGTGCTTATTCCTGAGACTTTTTGGCTCTTCTTATATGAAGATGCTATTTCTGTAAAACCTGATGATGCTTTAGGTGGCCTGATTCTTCCTTCAGGTTCTATAGAGTGTTCCCAATGCATTAATGAATTATCTGAAGCAGCATGCTTGGAGGATTCTTTGAGATCAGTTAAACAAAAGCAGCGCCAGAATCATGAGAAATTATTCCATGCTAAAAGTATGTCTCTCTCCGCGGATTGCAAATATTTCTTGCTGCCTTCTTCATGGATTTCAAAATGGAGAAATTACATCAGTCCATCACTCAAGAATCCAGATATACCTGAAACTTTAGACGGGGTAATTGATTCACTGATGTGTGAAAAGCACTTACAACTTGTTGAAAGACCTCCTCAACTGGTTTTCAGACGCGGTGCTATATTCCAGAGAGAATCTTCTGTAAGTGGCTTAACTATCATACCGGAGAATGATTGGATATGCTTTTGTGAAGAATGGGGTGGTACCAAGACCAAAGGGATATCTGCAACAATTGAGCACATTAATTATTCAGAGAACTTTTTGATTGGGTCCAGTGACAAGATGTTGATATGCGAAGATCAGTTACAGACAGGGGATAAAGTGAAAAATGAAAATGGAACTGGAAGTGAACAAATTTTGATCAAGACTTGTCCCGAGGTTTGTGAAAGTTGCATTGGAGAAAAAGAAAGCTGTGAATTAATGCATAAACTTAACTATTGCAATGAAGACATAAGTGTAATTCTTGTACGTGGTAAGGAGGTACCTAAATCAATCTTGGAGGCCTCAAAGGGATTAACTGAAACAGATCGGCGGGTTTCCAAGCGCTCCCGGAAGACTAAAAATGGGAATTCAGCTAGTCTAAAAGTTTCTGCTTCAACATCACTATACCAGTTGAAGATGATGATATGGGAATCTTTTGGGGTTGTCAAGGAAAACCAAATACTACATAAAGCTGATAGGATAATTGATATTGATGATGAGAGTGCTACCCTTGCGGATGCAAATATATTTGCCGGAGATCAGATTATAGTGAGGGATTCTGAGATCCATGAGAATCGAGATATTGCTGATGAGCTCTGCAGTGATAAGATGGAACTTCAGCACAACGAGGAAGGTTTTCGTGGAACACTTCTTACAGCAAACATTTCATCCCCGGTTGTTTAA 3258 0.4067 MSRPITRSKNKKLKQDDDGVCTSEIWRKIHETGVVTEDDINQLYMIYKPVCSGCRVNTKDNPNCFCALVPPLNGARKSGLWEKVSDFVESLGPDPNKDLRASDDSPAGLTNLGATCYANGILQCLYMNKLFREGMFSVEPDVLREQPVLDQLARLFAQLQGSKLAFVDSSPFVKTLELDNGVQQDSHEFLTLFLSLLERCLSHSKVPKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKTEDFYELELNVKGLKSLDESLDDYLTVEELHGDNQYFCESCNTRVDATRSIKLCTLPDVLNFQLKRCVFLPKTTTKKKITSAFSFPVQLDMRHRLHELCQFDLVYDLSAVLIHKGSGVNSGHYIAHIKDKNTGQWWEFDDECVTNLGNHPFGEGSSSSTTKSVATDATHSDCSEARIAESNGNGLNTTHSQSSLVETFSSCDAYMLMYHLKQTKNISENGGIVCGANHREIEGVVASARDGVSLPSHLYDEIQNFNASYLDACQQYSHGKELELNRITDRRQEVRSVLAEAPVPPLERPFYWISSDWLRQWADNIIPTSIDNTVIQCLHGKVPISKVTSIKRLSAKAWDKLFSKYGGMPTLSHDDHCRDCLIHGAQTVVSADSYRGRRESLKSLARDVLDGSCPDGKYFISRSWLQQWWKRKVLDAPSEADAGLTVAISCPHGLLMPEQAPGAKRVLIPETFWLFLYEDAISVKPDDALGGLILPSGSIECSQCINELSEAACLEDSLRSVKQKQRQNHEKLFHAKSMSLSADCKYFLLPSSWISKWRNYISPSLKNPDIPETLDGVIDSLMCEKHLQLVERPPQLVFRRGAIFQRESSVSGLTIIPENDWICFCEEWGGTKTKGISATIEHINYSENFLIGSSDKMLICEDQLQTGDKVKNENGTGSEQILIKTCPEVCESCIGEKESCELMHKLNYCNEDISVILVRGKEVPKSILEASKGLTETDRRVSKRSRKTKNGNSASLKVSASTSLYQLKMMIWESFGVVKENQILHKADRIIDIDDESATLADANIFAGDQIIVRDSEIHENRDIADELCSDKMELQHNEEGFRGTLLTANISSPVV 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04092 1085 Gene3D Cysteine proteinases 93 450 - -
Vifa2g04092 1085 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 74 448 - -
Vifa2g04092 1085 SUPERFAMILY DUSP-like 518 606 IPR035927 -
Vifa2g04092 1085 Pfam Ubiquitin carboxyl-terminal hydrolase 108 447 IPR001394 GO:0004843|GO:0016579
Vifa2g04092 1085 ProSiteProfiles DUSP domain profile. 621 728 IPR006615 GO:0004843
Vifa2g04092 1085 SMART dusp 532 608 IPR006615 GO:0004843
Vifa2g04092 1085 Gene3D - 744 865 IPR035927 -
Vifa2g04092 1085 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 450 IPR028889 -
Vifa2g04092 1085 SUPERFAMILY Cysteine proteinases 105 447 IPR038765 -
Vifa2g04092 1085 ProSiteProfiles DUSP domain profile. 514 606 IPR006615 GO:0004843
Vifa2g04092 1085 Gene3D - 975 1050 - -
Vifa2g04092 1085 FunFam ubiquitin carboxyl-terminal hydrolase 48 94 450 - -
Vifa2g04092 1085 CDD Peptidase_C19L 108 447 IPR033841 GO:0004843
Vifa2g04092 1085 FunFam Ubiquitin carboxyl-terminal hydrolase 26 505 603 - -
Vifa2g04092 1085 CDD Ubl_USP48 968 1076 IPR044743 GO:0004197|GO:0004843|GO:0016579
Vifa2g04092 1085 SUPERFAMILY Ubiquitin-like 978 1044 IPR029071 -
Vifa2g04092 1085 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Vifa2g04092 1085 ProSiteProfiles DUSP domain profile. 749 869 IPR006615 GO:0004843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04092 Vifa-Chr2 1196628968 1196637546 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04092 86 379 Miscellaneous Gene Families AT4G31670 29.618 1.61e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04092 - - gmx:100782778 1830.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04092 2 1196628968 1196637546 Vifa2g04092 2 1196628968 1196637546 ECH