Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04081 ATGTCGAATAATTTGGTTTCCGAGCCAGTAACGAGCCGGCAGATGGCTCAATTGGAGCCTATTTTGAACAAGGTTGATTCGTCGGGACTCTTGCATCCTGTAGCCAGTGATTCCGTGTCACAGAATCAGGGAACCTCGAATGGTGAACCCAAGTCTCAAGGCTTACCGCTTTCTGACCGGCAGAGTGGCCGGGTAGAAATGCAGGATGGGAATACGGGAGTGCATCGGCTTATTCCCCAGAAACAACCCGTGCAAATGGGGCCACGTCAACTGTCAGCAGCTCCTAAGCGGAAGACGACAATGGAGCTGCCTTCGGGTAGCTTCATAACACCTAGTAAGCGGGAAAAACCAGCGGCACACAGAACTTGGACACAGCAATCATCAAGTAAAGGTTCTCAACAGATGCAATCACCGACAAATGCTTCTAGAGCACAGCATTCGGCAGCATTTAGTAAGAGAAAAACACAGATGGACTCTACCTCCAGCAAACCCGGGACGCCTCGGTCCTCAAATTTTAAAAGTCAGAGTGCACAGATGAAAGAATCCTCCAAGGTTCAAACTGAATCATCTGAGAGTGTTAGGTCCAAGATGAGAGAGTCATTAGCTGCTGCTCTGGCGTTGGTATCCCAGCAAGATAAACCTCTGGTCTCAAACAATGACAAACCAAATGATGCGGCCAATAGCTCTCAGTGTGCTGAACCTGCATCTGCATCTGCCGACTCTGCTCCAGAACAAAAGCAGGAAATTTGTCAAACTGTTAATTCCTCTTTACCTGTGGCTGATTCTGTTGGCCATGTGATGGGAGAGCACATGAGTAATACATCTATTGGAGATTTTTCTGAAAAACCAAAGGACTATGAAGCAGGATTCACAAATGTGTTAAACAATGAAGACATGTTGAGTTCCGACAAGCAAGATTTCCAGTCTAACTACACTTTGACTACTGATGATGTTCCTTTCAGTGACAGTTTCTTTGTGAAAGATGACCTTCTGCAGGGAAATGGTCTTTCCTGGGTATTACCTGATATGGACCATATGATGGACATGGATGATCAAAGGGAAAGTCAAATTATGATGGAGAAGAAATTGGAACCTGAGGTAACAGGTGGAGTTTGTAAGGCGGTGGTCCCTTTACCTGAACTTTTAGCATCAAGGATAGAAGCAGAGCTCTTCAAACTGTTTGGAGGTGTGAATAAGAAATACAAAGAGAAGGGAAGGTCTCTTTTGTTCAACTTGAAAGATCGCAATAATCCTGAACTCAGAGAAAGGGTTATGTTTGGTAAAATTCCTCCCGAACAGTTATGCTCCATGACTGCGGAGGAACTTGCTTCAAAGGAGCTTTCTGAGTGGCGGATAGCCAAGGCTGAGGAGTTTGCTCAAATGGTGGTTTTACCTGATTCAGATGTTGATATTAGACGCTTAGTCAGGAAGACGCATAAAGGTGAATTTCAAGTGGAAGTTGAACACGAAGACAATGTTCCAGTGGAAGAGGTGTCTGGTGGCAAAACTTCTGTTGTTCGAAGGCAACCAGTTAAAAAGGACGTGAAAGCCACTTCTTCTTCTAAACCTGCCAGTGTAATCAAAAGAGATGTAAGCACTGACGAAGAAAAGAGCAACATACAGACGGATAATCAATTTTCCATTACCATTGCTTCCAATGACGGGACTGATCCAATGCAAGGGCTTATGGCAGATGATGATGCATTGAAGGACCCTGACTTTCTTCCCCCAATTGTATCTCTTGATGAATTCATGGAATCCCTTGATTCTGAGCCACCATTTGAAAATTTACCCGCTGAGTCTGGAAAGGCACCTACCTCAAACAAGGATGTTTCTGAGGTTGGAACAAAATCAAAATCTTCAGATTTAATTCCAAGTGAGAAAGGTGATGTCAGTGCTAATAAGTCTGGTAAGCTTCAAAGTACAGATGCTGAGGAAGAAAAAAAAGTTAATGCTGAAGCAGGGTCCAGTTTGTCTGATACAAAATACAGTGAAAGTCGATCTGACACCAAGCCGACTGATGGTCATACCAAGGAAATGTCAATTGATGGCAAAAAATCAAAATCCAATGACGCTGAGTTAAGAGCTAGTCAGTTTCAAGCAGAAGAGATATATGGCAAGGATAATGTGTCGAAAACTACAGTTCCCATTAAGGGTGAATGCCTTTGGGAAGGAATGCTTCAGCCAAACATCTCAACCACTGATTCAGTCATTAGCATCTTCAAAAGCGGTGATAAAACTTCTACCAAAGACTGGCCTGGATTTCTCGAGATTAAGGGAAGGGTTCGGCTGGATCCGTTTGAAAAATTTCTGCAAGAGCTTCCACAGTCAAGAAGTCGTGCCATCATGGTTTCACATTTTATTTCTAAAGGGTCAACCCCTGAGGAGCAAGCAACTCTCCGTGAGGTGGCTGATTCATATATTTTGGACGAGAGAGTGGGATTTGCAGAACCTGTGCCTGGAGTTGAACTTTACTTTTGCCCACCTCATAAGAAAACAGTTGAAATGCTGAGCAAGATACTTTCAAAGGAACAAATTGAGGCAGTTAATTCAATTGATAATGGTCTAATTGGTATTATTGTATGGAGAAAAACTAATATAACTACATCTATATCTCCCACCGCTCAATCACACAACAAACATAGCTCTAAAAGGCATAACTTGAGTAGAAGACAGCAAGATACTAATGCGAATGCCAAATCTACCCATAATGCAGTACCCTCTAAGACCACCGAGAGTGAACCTCCGGGTGATGATGGTGATGACGATGACGTTCCTCCTGGATTCGGGCCACCGGTAGCCCGAGGTGAGGATGACCTCCCTGAGTATAATTTTTCCAGTAGTTCAAATCCATCACACTTGGCTCAAAAACCTATGGGACCAAGTACAGTTCCATCTCACTCGGTTGGTCAAACCCCTTCCCGTCCCGCACAACAAATGAGAGAACTTGTGCACAAATATGGGCAAAACGCAACACCTGTATCCTCAGTAAACTGGCAGGACAAATTTAGGGGGTCAATTCAGCCCTGGAATGATGATGACGATGATGATATACCTGAATGGCAACCAAATATGAATCAGAATCAGTTTACTCCCCAACAAACAGTTCATAATTTTAATCTTAGACCTCCCATTATGAATCAACCATTTGTGGGTTTACCGCAGCAACCAATTATGCCTCCACAGTTTCTGCAACCCCCAACGAATGTGGCACATCACCAACGAAATTTTGTCCCTCAGTGGGTTCCTCCTATCCAGGGTATTACCAATCTACAACCAAGCAATGCACCACCACCACCACCACCACCTTATGGAACACCTACACAAGGAACTCCATGGTCCCATCATGTTTCTAGAAGTAGAGGACTTTAG 3372 0.4386 MSNNLVSEPVTSRQMAQLEPILNKVDSSGLLHPVASDSVSQNQGTSNGEPKSQGLPLSDRQSGRVEMQDGNTGVHRLIPQKQPVQMGPRQLSAAPKRKTTMELPSGSFITPSKREKPAAHRTWTQQSSSKGSQQMQSPTNASRAQHSAAFSKRKTQMDSTSSKPGTPRSSNFKSQSAQMKESSKVQTESSESVRSKMRESLAAALALVSQQDKPLVSNNDKPNDAANSSQCAEPASASADSAPEQKQEICQTVNSSLPVADSVGHVMGEHMSNTSIGDFSEKPKDYEAGFTNVLNNEDMLSSDKQDFQSNYTLTTDDVPFSDSFFVKDDLLQGNGLSWVLPDMDHMMDMDDQRESQIMMEKKLEPEVTGGVCKAVVPLPELLASRIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGKIPPEQLCSMTAEELASKELSEWRIAKAEEFAQMVVLPDSDVDIRRLVRKTHKGEFQVEVEHEDNVPVEEVSGGKTSVVRRQPVKKDVKATSSSKPASVIKRDVSTDEEKSNIQTDNQFSITIASNDGTDPMQGLMADDDALKDPDFLPPIVSLDEFMESLDSEPPFENLPAESGKAPTSNKDVSEVGTKSKSSDLIPSEKGDVSANKSGKLQSTDAEEEKKVNAEAGSSLSDTKYSESRSDTKPTDGHTKEMSIDGKKSKSNDAELRASQFQAEEIYGKDNVSKTTVPIKGECLWEGMLQPNISTTDSVISIFKSGDKTSTKDWPGFLEIKGRVRLDPFEKFLQELPQSRSRAIMVSHFISKGSTPEEQATLREVADSYILDERVGFAEPVPGVELYFCPPHKKTVEMLSKILSKEQIEAVNSIDNGLIGIIVWRKTNITTSISPTAQSHNKHSSKRHNLSRRQQDTNANAKSTHNAVPSKTTESEPPGDDGDDDDVPPGFGPPVARGEDDLPEYNFSSSSNPSHLAQKPMGPSTVPSHSVGQTPSRPAQQMRELVHKYGQNATPVSSVNWQDKFRGSIQPWNDDDDDDIPEWQPNMNQNQFTPQQTVHNFNLRPPIMNQPFVGLPQQPIMPPQFLQPPTNVAHHQRNFVPQWVPPIQGITNLQPSNAPPPPPPPYGTPTQGTPWSHHVSRSRGL 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04081 1123 MobiDBLite consensus disorder prediction 1 197 - -
Vifa2g04081 1123 MobiDBLite consensus disorder prediction 510 545 - -
Vifa2g04081 1123 SUPERFAMILY Elongation factor TFIIS domain 2 378 446 IPR036575 GO:0006351
Vifa2g04081 1123 MobiDBLite consensus disorder prediction 1093 1108 - -
Vifa2g04081 1123 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 102 946 - -
Vifa2g04081 1123 MobiDBLite consensus disorder prediction 942 976 - -
Vifa2g04081 1123 MobiDBLite consensus disorder prediction 589 690 - -
Vifa2g04081 1123 Pfam SPOC domain 720 862 IPR012921 -
Vifa2g04081 1123 SMART mid_6 350 453 IPR003618 GO:0006351
Vifa2g04081 1123 MobiDBLite consensus disorder prediction 892 911 - -
Vifa2g04081 1123 MobiDBLite consensus disorder prediction 550 569 - -
Vifa2g04081 1123 MobiDBLite consensus disorder prediction 33 68 - -
Vifa2g04081 1123 MobiDBLite consensus disorder prediction 601 639 - -
Vifa2g04081 1123 MobiDBLite consensus disorder prediction 212 248 - -
Vifa2g04081 1123 MobiDBLite consensus disorder prediction 1 18 - -
Vifa2g04081 1123 Pfam Transcription factor S-II (TFIIS), central domain 378 457 IPR003618 GO:0006351
Vifa2g04081 1123 MobiDBLite consensus disorder prediction 1085 1123 - -
Vifa2g04081 1123 MobiDBLite consensus disorder prediction 871 976 - -
Vifa2g04081 1123 Gene3D - 350 445 IPR036575 GO:0006351
Vifa2g04081 1123 MobiDBLite consensus disorder prediction 664 690 - -
Vifa2g04081 1123 CDD SPOC_TFIIS 722 862 - -
Vifa2g04081 1123 MobiDBLite consensus disorder prediction 121 190 - -
Vifa2g04081 1123 ProSiteProfiles TFIIS central domain profile. 352 470 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04081 Vifa-Chr2 1193547997 1193553784 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04081 - - gmx:100808809 1438.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04081 2 1193547997 1193553784 Vifa2g04081 2 1193547997 1193553784 ECH