LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g04055	ATGGGAACTGTTTCTGCTAGACACCCATTTGGAATCCATTTCCATTCCCATTCCCATTCCCCAATTCACCGATTCGATTCCTCAATCTTCCAATTTCCCTCTCACGTACAACTTTCCAGAATCACCTTGTATTCTTCTTCCCAGGGATTAGTTCACCGAGTATGTGCACGGCCTGATATTGATGATTTCTACTGGGAGAAAGATCCAACGCCCATTCTTGACACAATTGACAGCCCTCTTTGCTTGAAGAACTTATCCCTTCGGGAGTTGAAACAACTCGCTGCTGAAATCCGTTTAGATTTGTATTCTGTTTTGTCAGGTACACAAATATCCCCAAACCCAAGTATGGCTGCGACGGAGCTGACAGTTGCAATGCACCATGTTTTCCATGCTCCAGTAGACAAGATATTGTGGGATGTCGGTGATCAAACATATGCACATAAGATGCTTACTGGAAGGAGATTTCTCTTGAGGACAATCAGACAAAAGAATGGACTTTCTGGTTTTACTTCTCGATTTGAGAGTGAATATGATTCATTTGGTGCAGGTCATGGATGCAACAGTATATCTGCTGGACTTGGCATGGCGGTTGCACGGGATATTAAAGGGAGACGAGAACGTATAGTTGCAGTTATCAGCAATTGGACAACTATGTCTGGTCAGGTGTATGAGGCAATGGGAAATGCGGGATATTTGGATTCAAATATGGTGGTAATTTTGAATGATAGCCGCCACTCTTTACTCCCCAAAATTTACGAGGGCTCCAAAACCTCTGTCAATGCCCTATCTAGTACCCTTAGCAGGCTCCAATCCAGTAAATCTTTCCGAAGGTTTAGAGAAGCTGCTAAGGGTGTTACAAAACGTATTGGCAGGGGCATGCATGAATTGGCAGCTAAAGTTGATGAATATGCTCGTGGTATGATGGGTCCACTAGGTTCTACTCTATTTGAAGAGCTTGGGTTGTATTACATAGGGCCAGTGGATGGACACAATATTGAAGATCTCATATCTGTTCTTCAAGAAGTAGCTTCACTGGATTCGATGGGTCCTGTCTTGGTTCATGTTATAACCGATGAAAATCAGGTTGAAGAACACAATAAGAAAAGTTGTACAACAGACAAACAGCAGGATGAATATGTTAGTTCTGATTTGTTTTACAAAGCTGGTCAGCCTCAAACATATGGTGATTGCTTTGTGGAGTCTTTGGTTGCAGAAGCTGAGAAAGACAAAGATATTGTGGTTGTTCATGCAGGAATCACATCGGAGCCATCACTTGAACTGTTTCGTGAAAAATTTCCAGATAGGATTTTCAATATGGGAGTTGCCGAGCAACATGCAGTCACGTTTGCTTCTGGTTTGTCATGTGGTGGATTGAAGCCGTTTTGCATTGTACCTTCTTCCTTTTTACAGAGAGCCTATGATCAGGTTGTTCATGATGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATTACAAGTGCAGGATTGGTAGGTTCGGATGGTCCCGTCCAGTGTGGAGCATTTGATATAACATTCATGTCGTGCTTACCAAACATGATTGTCATGGCACCATCTGACGAGGTTGAACTTGTGAACATGGTGGCTACTGCTACTCGCATCAATGACCGGCCAGTTTGCTTTCGGTATCCTAGGGGTGCCTTGGTTAATAAAGGCCACACTATAGATGATGGAGTCCCAATTGAGATTGGAAAGGGAAGAGTTATTGTTGAAGATGCAAGGTTCTGCAAGCCCCTAGACATCAAGCTTCTGAGGCAACTTTGTAAACACCATTCTTTTCTAGTTACTGTTGAAGAAGGATCTATTGGAGGATTTGGTTCCCATGTTGCTCAATTTATTGCTCTGGATGGACTTCTTGACCGGAGAATTAAGTGGCGCCCTATTGTCTTACCAGACAGTTACATTGAACATGCATCCCCAAATCAACAGCTTGACAAAGCGGGGTTGACTGGACATCACATTGCTGCCACAGCGTTGAGTTTACTGGGCCGTACCCGTGAAGCTCTATCGTTTATGTGCTTTTAA	2043	0.4322	MGTVSARHPFGIHFHSHSHSPIHRFDSSIFQFPSHVQLSRITLYSSSQGLVHRVCARPDIDDFYWEKDPTPILDTIDSPLCLKNLSLRELKQLAAEIRLDLYSVLSGTQISPNPSMAATELTVAMHHVFHAPVDKILWDVGDQTYAHKMLTGRRFLLRTIRQKNGLSGFTSRFESEYDSFGAGHGCNSISAGLGMAVARDIKGRRERIVAVISNWTTMSGQVYEAMGNAGYLDSNMVVILNDSRHSLLPKIYEGSKTSVNALSSTLSRLQSSKSFRRFREAAKGVTKRIGRGMHELAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLDSMGPVLVHVITDENQVEEHNKKSCTTDKQQDEYVSSDLFYKAGQPQTYGDCFVESLVAEAEKDKDIVVVHAGITSEPSLELFREKFPDRIFNMGVAEQHAVTFASGLSCGGLKPFCIVPSSFLQRAYDQVVHDVDQQKIPVRFVITSAGLVGSDGPVQCGAFDITFMSCLPNMIVMAPSDEVELVNMVATATRINDRPVCFRYPRGALVNKGHTIDDGVPIEIGKGRVIVEDARFCKPLDIKLLRQLCKHHSFLVTVEEGSIGGFGSHVAQFIALDGLLDRRIKWRPIVLPDSYIEHASPNQQLDKAGLTGHHIAATALSLLGRTREALSFMCF	680

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g04055	680	Pfam	Transketolase, C-terminal domain	576	660	IPR033248	-
	Vifa2g04055	680	NCBIfam	1-deoxy-D-xylulose-5-phosphate synthase	75	575	IPR005477	GO:0008661\|GO:0016114
	Vifa2g04055	680	Pfam	1-deoxy-D-xylulose-5-phosphate synthase	73	357	IPR005477	GO:0008661\|GO:0016114
	Vifa2g04055	680	Gene3D	-	64	361	-	-
	Vifa2g04055	680	SUPERFAMILY	Thiamin diphosphate-binding fold (THDP-binding)	384	554	IPR029061	-
	Vifa2g04055	680	FunFam	1-deoxy-D-xylulose-5-phosphate synthase	391	559	-	-
	Vifa2g04055	680	SUPERFAMILY	TK C-terminal domain-like	574	669	IPR009014	GO:0003824
	Vifa2g04055	680	Gene3D	-	559	668	IPR009014	GO:0003824
	Vifa2g04055	680	PANTHER	1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED	45	577	IPR005477	GO:0008661\|GO:0016114
	Vifa2g04055	680	CDD	TPP_PYR_DXS_TK_like	398	551	-	-
	Vifa2g04055	680	CDD	TPP_DXS	113	357	IPR005477	GO:0008661\|GO:0016114
	Vifa2g04055	680	SMART	Transket_pyr_3	392	557	IPR005475	-
	Vifa2g04055	680	Pfam	Transketolase, pyrimidine binding domain	393	554	IPR005475	-
	Vifa2g04055	680	SUPERFAMILY	Thiamin diphosphate-binding fold (THDP-binding)	70	453	IPR029061	-
	Vifa2g04055	680	Gene3D	-	392	558	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g04055	Vifa-Chr2	1189028799	1189036392	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g04055	K01662		-	gmx:100793268	1065.45

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa2g04055	2	1189028799	1189036392	Vifa2g04055	2	1189028799	1189036392	ECH