Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04020 ATGGATTTAGAAGGAAGTGAAAGGGATTCTGTGCTAACTACTACGCAAGTGAGCATAGGTGGATTTGGCACGGATGTCAAAGCTTATGATCTTGTGTCATTCTTGGAATCTGAGATCGGATATGTAGATAGATGTCGGCTGAAGACTTCTTGCACTCCTCCGGAGTCATATCCAGAATTTAATATCAGTGATCCTAAACAGAAGGAAAAAACAGATGATTATAGAAAGGTGGCACCTCATGCCTTTGTGCATTTTACTCTGGCAGAATCTGCAACCGAGGCCCTCAATGCTGCAGGTCGCTGTGAACTAATTTTGAACGGTTGCCCATTAAAGGTCATCTGTGGGCCACATAATCCAAACTTCCTGAATAAAAGGAGGCGAACTGCGGCTCCTTTTAAGATGTCAGATGTCATCGTTGAAATTGGGACTTTGGTTAGCCTATCAAATTTTACTGTTGCTTGGAGAGGACCCGCTAAAGGGGTAAACTTTCTAGTGGACCCTTTTGATAGCATGTGCAAGCTTTGTTTCAATCGAGATGTTGCGTTCTCTCTCAAAGGAATGGCTAAAAAGGTAGTGATAAAGTGTGATTTTAAGGTGGGGTTCTTGGTTAGAGACATATTGGAGATTAAAAGATATGATGATACATCGTATCATGTTGTTTTATTACATCTAGCTTCACCACCTTTGGTATGGTACAGAACTGCTGATGACGATATTGAAGAATCAGTTACCATTGATTTGTTGGATGACGATGATCCTTGGATCAGAACCACTGACTTTACCCCTAGCGGGGCCATTGGTCGATGCAGTTTTTATAGAATTTCAATCCCGCCTCGTTATGGTGCAAAATTGAATAAGGCATTGGAATATCTGAGATGCCAAAGAGTGCAACGGGTTCAGCTTACACGGCCACTTAGGATACTAAATGAACCTGATTTTGGGGTGCCCATGTCAGATACTTTTTTCTACATAGATTTTCAGAAGGACATTTCATTTGATATAATGTTCTTGGTCAATGCAGTTGTGCATAGAGGAATATTCAACCAGTATAGTTTATCTAACCATTTTTTTGAACTGCTGAGAAATCAACCTAAGGATGTCAGCGTAGCTGCCCTGAAGCACTTATGTACTTACAAGCGCCCGGTGTTTGATGCATGTAAGAGGCTCAAAGCAGTCCAAGAATGGTTGCTCAGCAATCCAAAACTTTATCAGATCTCCAAGCAGTGTGATGATGTTATGGAGGTTAGAAGACTGGTTGTTACTCCAACAAAAGCCTATTGTATAGCCCCAGAAGTTGAATTGTCTAATAGGGTCCTCCGAAATTTTAAAGAGGTTTCAGACCGATTCTTGAGAGTTACCTTTATGGATGAAGGAATGCAAACACTTAATGTATATGCTCTTAGCTATTATGTTGCTCCCATTGTGAAGGAAATCACATTAAATTCCTTTAAACAGAATACAAGAATATATAAAAGGGTTAGGACAATCCTGGAAGATGGGTTTTACTTTTGTGGCCGAAAATATTCATTTTTGGCTTTTTCATCGAATCAACTTAGAGATCGTTCTGCATGGTTTTTTGCTGAAGACAAAAACATAAGCTGTGATCATATAAGAAGTTGGATGGGAAAATTTAATCAGAAGAATATTGCAAAGTGTGCGGCTAGAATGGGACAATGCTTCTCATCTACGTATGCATCAGTGGACGTTGCTGCGAATCAAGTTAACTCGATGCTACCAGATGTTGAGAGGAATAGTTATGTTTTTTCTGATGGCATTGGTATCATCACTACTGATCTTGCAGATGAAGTAGCTGAAAAATTGAAATTGGACAAGGTACCCTCCGCTTACCAGATCAGGTATGCTGGTTTTAAAGGGGTTGTAGCCTGTTGGCCTTCTAAAGGAGACGGAATCAAACTTTCTTTGAGGCCCAGCATGAACAAGTTTCAGTCTACTCATACTACCTTGGAAATCTGTGCCTGGACTAGGTTTCAACCTGGTTTTCTTAACAGGCAGATTATAACATTGCTTTCAGCTCTGGACGTGCCCGACGAAATATTCTGGAAAATGCAGGAGAGCATGATTTCAAAGTTAAACCAAATGCTCGTTGATGCAGAAGTTGCCTTTGACGTTCTTACTAAATCTTGTGCTGAGCATGGAAATGCTGCAGCAATAATGTTAAGTTGCGGCTTCAGTCCCAAAACAGAACCTCATCTTAGAGGCATGCTAAATTCTATCCGTGCTGCGCAGCTTTGGGGCCTTAGAGAAAAGTCTAGGATTTTTGTTTCATCTGGGAGATGGTTGATGGGTGTTTTAGATGAGTTTGGTGTGCTTGAACAAGGGCAATGCTTTGTTCAAGTTTCTACTCCTTCTCTTGAAAATTGTTTCGCAAAGCACGGCTCAAGATTTTCAGAGACAAACTCCCTGCATGTGGTTAAAGGTCTTGTGGTGATAGCCAAAAATCCATGTCTTCATCCTGGAGATGTGAGAGTTTTGGAAGCAGTTGATGTCCCGGATTTATATCATTTAAATGACTGTCTTGTTTTCCCTCAAAAGGGAGAAAGACCCCATACAAATGAAGCTTCTGGAAGTGACCTTGATGGGGATTTGTACTTTGTCACATGGGATGGAAATCTCATTCCACCTAGTAAGAGGAGCTGGACACCTATGGAGTACACTGCTTCAGAAAGCAAGCTTCAAATGCGGCAAGTCACTATCCGGGCCATCATTGAGTTTTTTGTCAAAAACATGGTGAATGAGCATTTGGGTTCAATCTGTAATGCACATGTGGTACATGCTGATTCCAGTGACTATGGTGCTTTGGATGAGAAATGCATACACTTGGCTGAGTTAGCAGCCACTGCTGTTGATTTTCCAAAGACTGGCAAGCTTGTCATTATGCCTCCTAATCTGAAACCCAAGCTGTACCCTGATTTTATGGGGAAAGAACACCACCAATCATACAAGTCGAAGAAAATCCTGGGCAGACTTTACCGGCGTATCAAAGACGCGTATGATAAAGATATTGATGCACCTGAAATGAACTGTGTGTCCGGTGATATAAATTATGATACAGATCTTGAGGTTCCAGGATCTGCTGATTTTATTGATGATGCATGGGAACAAAAGTGCTCTTATGATGGCCAGTTAACTGGATTACTGGGTCAGTACAAAGTGAAAACTGAAGAAGAAGTTGTCACTGGACAGATCTGGTCCATGCCTAAATACAACAGTAGGAAGCATGGGGAACTTAAGGAGAGGCTGAAGCACTCATACAGTGCTCTCAAAAGAGAATTTAGGCAAACCTTTGAGAAACCGAATTTAGATGTTGGAGCGTTGAGTGATGAAGAAAAAAATTTGATGTATGAACAGAAAGCTTCTGCCTGGTATCAGGTGACATATCATCCTAAATGGGTCAAAAAAACCCTCGAATTGCAAATTAAAACCTCAGATGACCAAGAGACAGATAGTTTGAAGAATGTGATGTTGAGTTTCCCTTGGATTGCTGTTGATTACCTAGCTCGCACAAAGATAAGGAATCGGAAAGTTGGAAAATTTGATTCAACCAAGCCAATTGATTCACTGGCAAAATATCTATCTGAAAGGTTATAG 3609 0.4087 MDLEGSERDSVLTTTQVSIGGFGTDVKAYDLVSFLESEIGYVDRCRLKTSCTPPESYPEFNISDPKQKEKTDDYRKVAPHAFVHFTLAESATEALNAAGRCELILNGCPLKVICGPHNPNFLNKRRRTAAPFKMSDVIVEIGTLVSLSNFTVAWRGPAKGVNFLVDPFDSMCKLCFNRDVAFSLKGMAKKVVIKCDFKVGFLVRDILEIKRYDDTSYHVVLLHLASPPLVWYRTADDDIEESVTIDLLDDDDPWIRTTDFTPSGAIGRCSFYRISIPPRYGAKLNKALEYLRCQRVQRVQLTRPLRILNEPDFGVPMSDTFFYIDFQKDISFDIMFLVNAVVHRGIFNQYSLSNHFFELLRNQPKDVSVAALKHLCTYKRPVFDACKRLKAVQEWLLSNPKLYQISKQCDDVMEVRRLVVTPTKAYCIAPEVELSNRVLRNFKEVSDRFLRVTFMDEGMQTLNVYALSYYVAPIVKEITLNSFKQNTRIYKRVRTILEDGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDKNISCDHIRSWMGKFNQKNIAKCAARMGQCFSSTYASVDVAANQVNSMLPDVERNSYVFSDGIGIITTDLADEVAEKLKLDKVPSAYQIRYAGFKGVVACWPSKGDGIKLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQIITLLSALDVPDEIFWKMQESMISKLNQMLVDAEVAFDVLTKSCAEHGNAAAIMLSCGFSPKTEPHLRGMLNSIRAAQLWGLREKSRIFVSSGRWLMGVLDEFGVLEQGQCFVQVSTPSLENCFAKHGSRFSETNSLHVVKGLVVIAKNPCLHPGDVRVLEAVDVPDLYHLNDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDGNLIPPSKRSWTPMEYTASESKLQMRQVTIRAIIEFFVKNMVNEHLGSICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVIMPPNLKPKLYPDFMGKEHHQSYKSKKILGRLYRRIKDAYDKDIDAPEMNCVSGDINYDTDLEVPGSADFIDDAWEQKCSYDGQLTGLLGQYKVKTEEEVVTGQIWSMPKYNSRKHGELKERLKHSYSALKREFRQTFEKPNLDVGALSDEEKNLMYEQKASAWYQVTYHPKWVKKTLELQIKTSDDQETDSLKNVMLSFPWIAVDYLARTKIRNRKVGKFDSTKPIDSLAKYLSERL 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04020 1202 PANTHER RNA-DEPENDENT RNA POLYMERASE 14 1199 IPR007855 GO:0003968
Vifa2g04020 1202 Pfam RNA dependent RNA polymerase 420 1000 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04020 Vifa-Chr2 1179188186 1179192188 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04020 K11699 - gmx:100795178 2025.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04020 2 1179188186 1179192188 Vifa2g04020 2 1179188186 1179192188 ECH