Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03985 ATGCAGAGACGAAGTCCTCCCAAGCATAGACACGATGGGACTTCGCCGCTGCCTCTTGGCATGGATTGGAGTCCTGCTCCTCGAAAATGGAATGGACGGGAAACGGAATGGCCACACAATCATCGTACCGGTTGGAGCTATTGCGTCGTAATACCTTCTTGGGTCTTCGTGCCAAAATCAAGGAATTCAGATCCTATAGTGTTCTACAGGCTTCAAGTTGGTATACAATCACCAGAAGGGATTACGAATATCCATGGAGTACTAAGAAGGTTCAATGATTTTATAAAGTTGTATGTTGATCTTAAAAAGGAGTTCCCCGGGAAAAATATCCCTCCAGCGCCACCCAAGGGACTCTTGCGATTGAAAAGTCGAGCTTTATTGGAAGAGAGAAGGCGCTCTTTGGAGGAGTGGATCACCAAACTGTTGTCTGACATTGATATCTCAAGATGTGCTCCCGTGGCATCATTTCTTGAGCTAGAAACTGCTGCTAGATCTTCATTTCAAGATGCAAGCCAGCAGAATTCAGTAACAGATCCTGATTCTAATAACAGAGATTATTCATTGCAATCATCTCTCCATTTGAACTTATCATTAGCTGCTGGAAGTTCATCTGTTGCGTCAGATTATGGTAGCGATACTCCATATGATGCATCTGAAGTAGGAACTCCGAGAATTGGGCGGGATGATAACTCTGAAGTTGGGACAGATGATCTGACCTTAGATGAAGATATGACGAATCCAATAGAAAGGCTTGTAAAATATGGCATCTCAAATATTGATGAGGGTTTGTTTTTGGGTCAGACTATTCTAGAGCAATTAGAAGGACTTCCTAGGCATAAAGTAAATGCCAGACATATGAACAATGTTACAGGGAAGGACAGAAGTAATGGTAATTCGTATGATTCTTCACTTCTAGCTAATAATACCATGGAACGTTTCTCTGAGCCTGGACATGCTAAAGTTTTTGGTCACATTCGTAAGCTTTCAAATGAGAGTGTTGGAAGTGATGGAAGCTCAGTACGAGGTAGTGACATGTCTAATTTTGGGATTCCAAATTCGTCTGGTGATGGATCTGTCGACCTTCCTGGATGTGCCTCAGTTTCAAGAGAAACGGATATTACGGGCCACAAGTTGAAGTGTACCGGCGATGCTCAATTAGTCCTTCCGCTAGATCAACGCAGTAAACTGAACAGGATTCTTTCAACCATGCAGAGAAGACTAGTCACAGCGAAAACTGATATGGAGGACCTTATAGTTAGATTAAATCAAGAAATAGCTGCAAAGGATTTTCTTACAACAAAGGTCAAGGATGTGGAAGTTGAACTTGAAACTACCAAACAGAAAAATAAGGAGAACTTGCAGCAGGCTATTCTGATCGAAAGAGAAAGATTTACCCAAATGCAGTGGGATATGGAGGAACTTAGACGAAAGTCAATGGAAATGGAGATGAAACTTAAGTCTGAATCAGATGGAAATGCTGGTCAGAATTTGACAAAATCAATTGTCCATCAGAACGATGTGCTGTTGCAGGATTTAGATGCTGCTAGAGAGCAGCTTGAAATTTTGTCAAAACAGTATGTAGAGCTAGAAGCAAAATCCAAAGCAGATATTAAAGTTCTGGTTAAAGAAGTCAAATCTCTCCGTAGTTCCCAAACAGAATTGAAGAAGGAACTTAGTGAGGCTATAAAGGAGAAACTGGAAGCGGAGGTAGAAGTCAAATCTCTCCGTAGTTCCCAAACAGAATTGAAGAAGGAACTTAGTGAGTCCATAAAGGAGAAACTGGATGCGGAGAAACTACTACTTCGTGAAAGAGAGAAGAGGGAAGAAGCCGAAACAGCTTCTAGAGAATTGCTTGAGAAATGTGGCCTTCTTTTTAAGCAGCTTCAAGAGTGCAATGTCGATCTTCCTTACAATGATGAGGATAGGTCAGTCTTGCATTCATCAACATCAACTGATGCTTTTAATCTATTAAAGACATCTGATGGCCGAATCGACATCCTACTAGCAGAGGTAGAAAACTTAGAGAAGGACTACAGAAATGCAGCTTTTAATGTAGATAAAACCAATGACATACAAGATGGTGTAATCTGTGGTGATGAAATGAGAAAGATCATAGCAGATTTGTTCGTTGATAATGTTAGATTGAGAAAACAAACAAATCAGATTACAAGGCATGCTCTCAAATTGGAAATGACAACAAGCGTTGATTCTCCTTCAATTGAAAATGTAACAAATAGTTAG 2241 0.4065 MQRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRETEWPHNHRTGWSYCVVIPSWVFVPKSRNSDPIVFYRLQVGIQSPEGITNIHGVLRRFNDFIKLYVDLKKEFPGKNIPPAPPKGLLRLKSRALLEERRRSLEEWITKLLSDIDISRCAPVASFLELETAARSSFQDASQQNSVTDPDSNNRDYSLQSSLHLNLSLAAGSSSVASDYGSDTPYDASEVGTPRIGRDDNSEVGTDDLTLDEDMTNPIERLVKYGISNIDEGLFLGQTILEQLEGLPRHKVNARHMNNVTGKDRSNGNSYDSSLLANNTMERFSEPGHAKVFGHIRKLSNESVGSDGSSVRGSDMSNFGIPNSSGDGSVDLPGCASVSRETDITGHKLKCTGDAQLVLPLDQRSKLNRILSTMQRRLVTAKTDMEDLIVRLNQEIAAKDFLTTKVKDVEVELETTKQKNKENLQQAILIERERFTQMQWDMEELRRKSMEMEMKLKSESDGNAGQNLTKSIVHQNDVLLQDLDAAREQLEILSKQYVELEAKSKADIKVLVKEVKSLRSSQTELKKELSEAIKEKLEAEVEVKSLRSSQTELKKELSESIKEKLDAEKLLLREREKREEAETASRELLEKCGLLFKQLQECNVDLPYNDEDRSVLHSSTSTDAFNLLKTSDGRIDILLAEVENLEKDYRNAAFNVDKTNDIQDGVICGDEMRKIIADLFVDNVRLRKQTNQITRHALKLEMTTSVDSPSIENVTNS 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03985 746 Coils Coil 537 585 - -
Vifa2g03985 746 ProSiteProfiles PX domain profile. 47 164 IPR001683 GO:0035091
Vifa2g03985 746 Pfam PX domain 86 158 IPR001683 GO:0035091
Vifa2g03985 746 Gene3D - 51 186 IPR036871 GO:0035091
Vifa2g03985 746 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 1 570 IPR044588 GO:0015031
Vifa2g03985 746 Coils Coil 591 620 - -
Vifa2g03985 746 SMART PX_2 43 160 IPR001683 GO:0035091
Vifa2g03985 746 MobiDBLite consensus disorder prediction 167 187 - -
Vifa2g03985 746 Coils Coil 505 532 - -
Vifa2g03985 746 SUPERFAMILY PX domain 40 160 IPR036871 GO:0035091
Vifa2g03985 746 Coils Coil 428 455 - -
Vifa2g03985 746 Coils Coil 657 684 - -
Vifa2g03985 746 FunFam Phox (PX) domain-containing protein 46 183 - -
Vifa2g03985 746 MobiDBLite consensus disorder prediction 1 25 - -
Vifa2g03985 746 MobiDBLite consensus disorder prediction 205 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03985 Vifa-Chr2 1172598167 1172608786 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03985 - - gmx:100792151 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03985 2 1172598167 1172608786 Vifa2g03985 2 1172598167 1172608786 ECH