Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03975 ATGGAGACTCGAAAAATCTATAGTAAATTCTTTCAGGCTGGTGGATGTGAACTTCGAATTGGTGTGTATGAGTCATTTGATACCATATGTATTTATTTGGAGAGTGATCAGGCTGTTGGTAGTGATCCTGATAAAAACTTCTGGGTCAGATACAGAATGGCTGTTGTGAATCAAAAAAATCCAGCCAAGACTGTATGGAAAGAATCTTCTATCTGCACAAAAACTTGGAATAATTCTGTATTGCAATTCATGAAGGTGTCTGATATGTTAGAAGCAGATGCAGGATTTCTTGTCCGTGACACCGTTGTTTTTGTGTGTGAAATATTGGATTGCTGCCCTTGGTTTGACTTTTCAGACTTAGAGGTTTTTGCTTCGGAGGATGATCAGGATGCATTGACAACTGATCCCGATGAACTGATAGACTCTGAAGACAGTGAAGGGATAAGTGGAGATGAGGAAGATATTTTTAGAAATCTTCTTTCCAGAGCTGGATTTCATTTAACTTATGGAGATAATCCTTCACAGCCGCAGGTTACTTTAAGAGAGAAACTTTTAATGGATGCTGGTGCAATTGCTGGGTTTCTGACTGGACTTCGGGTTTATCTTGATGATCCTGCAAAAGTAAAGCGTTTGCTTCTGCCTACGAAGCTCACTGGTAGTTATGATGGGAAGAAGGCCACCAAGGCTGATGAGTCTTCCCCAAGTTTGATGAATTTGCTGATGGGAGTTAAAGTCTTACAGCAAGCAATCATTGATTTACTATTGGATATAATGGTTGAGTGCTGCCAGCCTTCTGAAGTGGGCCCTGCTGCTGATTCTGTTGATGAATGCTCGAAGCCTTTTCCAGACAGCAGTGGAACTGCTAGTCCTCCTGAACGTGATAATGAAGAACGAGTAGTGGAGTCTGCACAAGTTCTTGTTAATGAGAGATTGAATTCTGCCATCGAAGAAAGCAGTAGTACGTCTTCTGTACATAGCTTTGATTTAAATGGAAATGGTATTCAGGGAAAAACTCTTCCTGGACAGCCTACTTGTCCACCAGAAACGTGTGCCACTGTTTCAGAAAATGCGTCATTTCGGTCAAAGACCAAATGGCCAGAGCAGTCTGAGGAGCTCTTAGGTTTGATTGTAAACTCACTAAGAGCTTTGGATGGGGCCGTTCCACAAGGTTGTCCAGAGCCAAGACGGCGACCTCAGTCTGCGCAGAAAATTGCTCTTGTATTGGACAAGGCTCCCAAGCATTTGCAAGCAGATCTTGTTGCTTTGGTACCCAAATTGGTAGAGCAGTCAGAACACCCATTGGCTGCACATGCACTTCTTGAGCGCCTGCAACAGCCAGATGCAGAACCTTCTTTGCGAATGCCTGTTTTTGGGGCTCTTAGTCAATTGGAATGTGGTAGTGAAGTGTGGGAGCGCATTCTATTTCAGTCATTTGAGCTTTTGACGGATTCAAATGACGAAGCCCTGGTTGCAACAATAGATTTTGTATTCAAAGCAGCATCTCAATGTCAACACCTCCCCGAAGCAGTTAGGTCTGTTCGTGTCAGGCTGAAAAGTTTAGGTCTTCATGTGTCGCCTTGTGTCCTTGACTTTTTGAGCAAGACTATAAATAGTTGGGGAGATGTAGCTGAAACCATACTGAGGGATATTGATTGTGACGAGGATTATGGTGAAAGTTGCACTGCTCTACCCTGTGGGATTTTCTTATTTGCTTCTCAAACATTTGAGAGAGCTGTAGCTCGAGGTGCAATAGGTGCTCAGTCTGTAGCCCTGGTATTGGAAAGTCTACTTTCCCAAAGATTGAACAATAGTGCCAGAACCGAAAATTTTCAACATTCAGATGGTGCAACGGAGGAGGATGCCTGTGAGCAATTGGGAGTTCAAAGGGATGATATTACATTAGTTCTTGGTCTTGCTGAAACTTTGGCACTCTCCAGGGACCTATGCGTGCAAGAATTTGTGAAACTGCTCTACGTGATAATCTTTAAATGGTATGCTAATGAATCTTACCGGGGGAAGATGCTGAAGACGCTTGTTGACCGTGTCACCAGCACTACTGATAATGGTCGCGAAGTAGATTTTGATTTGGATATCTTGGTTACTTTGGTCTGTGAGGAACAGGAGTATATTAGGCCTGTTTTGAGTATGATGCGTGGAGTTGCCGAACTTTCAAATATTGATCGAGCTGCTCTGTGGCACCAGTTATGTGCTAGTGAAGATGAAATTATCCGCGTTTGTGAAGAAAACAAAACTGAGATTTCTAATATGGCCAAGGAAAAAGCTATTCTATCACAAAAGCTGAGTGAATCCGAGGCCACAAACAGTCGTCTCAAGTCCGAAATGAAGGCCGAGGTAGATCGGTTTTCTCGGGAAAAGAAGGAACTAGGAGAACAAATTCACGAAGTTGAGAGTCAGCTGGAATGGCATCGCTCAGAGCGGGATGATGAAATATTAAAGCTCTCTGCAGAGAATAAAGTTCTTCATGATCGTTTGCATGATGCAGAGACACAACTTTCTCAGTTGAAGTCTCGGAAACGTGATGAACTAAAGAAAATAGTAAAGGAGAAAAATACACTTGCCGAAAGATTGAAGAATGCTGAAGCTGCACGCAAGCATTTTGATGAAGAATTGAAAAGATTAGCAACAGAAAACGTGACTCGGGAAGAAATCCGCCAATCGCTGGAGGACGAAGTTCGTAGATTGACTCAAACAGTTGGACAAACCGAGGGAGAAAAACGGGAAAAAGAAGAGCAGGTTGCTAGGTGTGAAGCATATATTGATGACATGCAATCAAAGTTGCAGGCCTACCAGCAATATATCCTCAGCGCTGAGGCCTCACTCAAGGAGGAAATGTCGCGACATGCCCCATTATATGGTGCTGGTCTGGAGGCTCTATCAATGAAAGAGTTGGAAACAATATCACGTATTCATGAAGAGGGTCTGAGGCAGATCCACGCCCTTCAACAGCGTAAAGGGAGTCCGGCTGGGAGTCCGCATTTGAGTCCCCATACTCTCCCTCACAGCCATGGATTATATCCTTCTGCAACCGTAGGCCTTCCTCCATCAATCATCCCAAATGGAGTAGGGATCCATAGCAACGGGCATGTGAATGGTGCAGTAGGACCCTGGTTTAACCACCCTTGA 3144 0.4377 METRKIYSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFDFSDLEVFASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLTGSYDGKKATKADESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEVGPAADSVDECSKPFPDSSGTASPPERDNEERVVESAQVLVNERLNSAIEESSSTSSVHSFDLNGNGIQGKTLPGQPTCPPETCATVSENASFRSKTKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKIALVLDKAPKHLQADLVALVPKLVEQSEHPLAAHALLERLQQPDAEPSLRMPVFGALSQLECGSEVWERILFQSFELLTDSNDEALVATIDFVFKAASQCQHLPEAVRSVRVRLKSLGLHVSPCVLDFLSKTINSWGDVAETILRDIDCDEDYGESCTALPCGIFLFASQTFERAVARGAIGAQSVALVLESLLSQRLNNSARTENFQHSDGATEEDACEQLGVQRDDITLVLGLAETLALSRDLCVQEFVKLLYVIIFKWYANESYRGKMLKTLVDRVTSTTDNGREVDFDLDILVTLVCEEQEYIRPVLSMMRGVAELSNIDRAALWHQLCASEDEIIRVCEENKTEISNMAKEKAILSQKLSESEATNSRLKSEMKAEVDRFSREKKELGEQIHEVESQLEWHRSERDDEILKLSAENKVLHDRLHDAETQLSQLKSRKRDELKKIVKEKNTLAERLKNAEAARKHFDEELKRLATENVTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDDMQSKLQAYQQYILSAEASLKEEMSRHAPLYGAGLEALSMKELETISRIHEEGLRQIHALQQRKGSPAGSPHLSPHTLPHSHGLYPSATVGLPPSIIPNGVGIHSNGHVNGAVGPWFNHP 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03975 1047 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1 114 IPR008974 GO:0005515
Vifa2g03975 1047 MobiDBLite consensus disorder prediction 268 299 - -
Vifa2g03975 1047 PANTHER TRAF-LIKE FAMILY PROTEIN 570 1046 - -
Vifa2g03975 1047 ProSiteProfiles MATH/TRAF domain profile. 1 108 IPR002083 GO:0005515
Vifa2g03975 1047 MobiDBLite consensus disorder prediction 314 343 - -
Vifa2g03975 1047 Coils Coil 817 883 - -
Vifa2g03975 1047 MobiDBLite consensus disorder prediction 314 339 - -
Vifa2g03975 1047 Coils Coil 891 932 - -
Vifa2g03975 1047 CDD MATH 2 108 IPR002083 GO:0005515
Vifa2g03975 1047 MobiDBLite consensus disorder prediction 987 1012 - -
Vifa2g03975 1047 SUPERFAMILY TRAF domain-like 4 109 - -
Vifa2g03975 1047 Coils Coil 760 812 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03975 - - ccaj:109798115 1793.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03975 2 1168928600 1168935101 Vifa2g03975 2 1168928600 1168935101 ECH