Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03964 ATGTGTACCTTCTCTCTTCTCAAATGCTACACACCCTTCTCCTCCATGCTCTTCACCCACTCCCCTCGAACCCTTCTCTCCGGCCACCGCGCCGCCGTCTTCAGAAAAAATAACTTTCCTTCCTTTCGCGCCGTCTCGTCTTATCAACCATTGACGGCGGAGAAGAATTCCAACGACGGTGAAAGCTCTTCAAAAATTCCATCGCCGGAAGTATGGCTTTACAACACAATGAGTAAAAAGAAAGAGCTTTTCAAACCGAAACTCGAGTCCAGAGTTGGAATGTACGTTTGTGGAGTCACTGCTTATGATCTCAGCCATATTGGTCATGCTCGTGTTTACGTCAATTTTGATCTTCTTTATAGATATTTTAAGCACTTGGGATTGGAAGTTCGTTATGTTCGCAATTTTACCGATGTAGATGACAAGATAATTGCTAGATCAAAGGAGTTAGGAGAAGATCCAATCAGTTTGAGTCGACGCTATTGTGAAGAGTTCTGTCATGACATGGTAACTCTTAACTGTTTGCCTCCAACCGTGGAACCAAAAGTCTCTCAGCACATACCCCAAATCATTGATATGATTGAGAAGATTCTTAATAATGGGTATGCCTACAATGTTGATGGGGATATATACTTTAATGTAGAAAAATTTCCAGAATATGGGAAGTTGTCTAGTCGAGGTCTAGAAGATAATCGAGCTGGTGAGAGGGTTGCTGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTCTTTGGAAGTCTGTAAAGCCAGGAGAGCCATTTTGGGATAGTCCCTGGGGTTCCGGAAGACCTGGGTGGCATATTGAATGTAGTGCTATGAGTGAAGCTTATCTCGGTTACTCTTTTGACATCCACGGTGGAGGGATTGACCTTGTATTTCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCTTGTATCAAAAGCCATATTAGTGTATGGATGCACAATGGATTTGTCACCATTGACTCTGTGAAGATGTCTAAATCTCTGGGAAACTTTTTCACAATACGGCAGGTTGTAGATGTTTACCATCCACTGGCTTTGAGATATTTTTTGATGAGTGCCCATTATAGATCTCCGATGAACTACTCTAATATACACCTTGAAAGTGCTTCAGACCGTGTTTTTTATATACACGAGACATTACATGCATGTGAAAGCTTGCTGAACCAGCATGATCAGACAGTTAGGAAGGATTCCGTCCCATCGGATACTTTGAGTATTATTGATAACCTGTATAATGTTTTTCTGACCTCAATGTCTGATGATCTTCACACTCCAGTTGTATTGGCCGGACTATCTGACCCACTTAAATTAATTAACGACTTACTGAATACTCGCAAGGGGAAAAAACAACAATTTCGAATAGAATCACTTGCACTGTTGAAGAAAAGCATTGAGGACGTCCTTACTGTTATAGGCCTTATGCCTTCAAGTTACAATGAGGTTTTGCAACAGCTTAGGGAAAAAGCGCTGAAGCGTGCAAACGTGACAGAAGATGAAATCTTGCAGAAGATTGAAGAAAGGGCTGCTGCTAGAATACAAAAAGACTTCACCAAATCCGATGACATAAGGAAAGATTTGGCTGTTCTTGGTATTGCTCTTATGGATAGTCCAAATGGCACAACTTGGAGGCCTACCATTCCTCTTCCGCTTCAAGAGCAGCTCTAG 1698 0.4176 MCTFSLLKCYTPFSSMLFTHSPRTLLSGHRAAVFRKNNFPSFRAVSSYQPLTAEKNSNDGESSSKIPSPEVWLYNTMSKKKELFKPKLESRVGMYVCGVTAYDLSHIGHARVYVNFDLLYRYFKHLGLEVRYVRNFTDVDDKIIARSKELGEDPISLSRRYCEEFCHDMVTLNCLPPTVEPKVSQHIPQIIDMIEKILNNGYAYNVDGDIYFNVEKFPEYGKLSSRGLEDNRAGERVAVDSRKKNPADFALWKSVKPGEPFWDSPWGSGRPGWHIECSAMSEAYLGYSFDIHGGGIDLVFPHHENEIAQSCAACIKSHISVWMHNGFVTIDSVKMSKSLGNFFTIRQVVDVYHPLALRYFLMSAHYRSPMNYSNIHLESASDRVFYIHETLHACESLLNQHDQTVRKDSVPSDTLSIIDNLYNVFLTSMSDDLHTPVVLAGLSDPLKLINDLLNTRKGKKQQFRIESLALLKKSIEDVLTVIGLMPSSYNEVLQQLREKALKRANVTEDEILQKIEERAAARIQKDFTKSDDIRKDLAVLGIALMDSPNGTTWRPTIPLPLQEQL 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03964 565 FunFam Cysteine--tRNA ligase 70 371 - -
Vifa2g03964 565 NCBIfam cysteine--tRNA ligase 73 554 IPR015803 GO:0004817|GO:0005524|GO:0006423
Vifa2g03964 565 Gene3D - 375 555 - -
Vifa2g03964 565 PRINTS Cysteinyl-tRNA synthetase signature 259 277 IPR024909 -
Vifa2g03964 565 PRINTS Cysteinyl-tRNA synthetase signature 94 105 IPR024909 -
Vifa2g03964 565 PRINTS Cysteinyl-tRNA synthetase signature 130 139 IPR024909 -
Vifa2g03964 565 PRINTS Cysteinyl-tRNA synthetase signature 290 311 IPR024909 -
Vifa2g03964 565 CDD CysRS_core 72 373 IPR032678 -
Vifa2g03964 565 Coils Coil 490 510 - -
Vifa2g03964 565 Pfam tRNA synthetases class I (C) catalytic domain 85 380 IPR032678 -
Vifa2g03964 565 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 411 555 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vifa2g03964 565 Hamap Cysteine--tRNA ligase [cysS]. 71 556 IPR015803 GO:0004817|GO:0005524|GO:0006423
Vifa2g03964 565 Gene3D HUPs 54 373 IPR014729 -
Vifa2g03964 565 SUPERFAMILY Nucleotidylyl transferase 70 378 - -
Vifa2g03964 565 PANTHER CYSTEINYL-TRNA SYNTHETASE 64 562 IPR024909 -
Vifa2g03964 565 FunFam Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 373 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03964 Vifa-Chr2 1166405078 1166408556 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03964 K01883 - gmx:100786700 958.747