Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03963 ATGTCTTTCTTTTCTACTCTCCGTCGATCCTCCATCTTCATCCAACGCTTCACAACCTCAACTCCATCATCTTCTTCACCTCCACCATCCCTACCGAATTCCAACTCACCGCGATATCCAAACTGGATTTCACCCTTTGCTCTTGCTTCTGCTTTTGCTCTTCTCTATTACTTCTCCAAACACAATTCACATTTCAACTCTCATTTTTTAAACAATGCTTTTACAAAACTATCACTTCCTGAGAATTCCAATAATCAGTTTCTTTTTGGAGATGCCTACAGAAGTAAAGTTTTCTTCAACTATGAGAAACGCATAAGGCTGCATAGTCCACCAGAAAAGGTTTTTGAATACTTTGCATCGTCTCGTATGCCAGAAGGGGAAGTTCTTATGAATCCAGCAGATTTAATGCGTGCAGTTGTTCCTGTTTTCCCTCCATCTGAATCAAATCTTGTTAGAGATGGATACTTGAAAGGCGAAAGAAATCCCGGCCATTTGTTATGTCCCCCTTCGGAACTTTTTATGCTTTTCGATGTAAACAGGGATGGATTAATATCACTCAGGGAGTATTTATTCTTGGTAACACTGCTTAGCATTCCAGAATCAAGCTTTTCTGCCGTATTCAAAATGTTTGACATGGATAATGATGGGGAGATAGATAAAGAAGAATTCAAAAGAGTGATGGCATCAATGCGATCTCATAGCAGACATGGTATTCATCGAAGGGATCTAGAGGCCGATGCCTCTGTAGAAAATGGAAGGATGGTGAAATACTTATTCGATAAAGACGGAAATGGTCACCTCGGACATGATAAATTTGTGCAGTTTATAAGAGATTTGCATGATGAAATTTTGAGGCTGGAGTTTGTTCATTATGACTTCAAATCGCAAAAAACCATATCAGCAAAGGATTTTGCACACTCCATAGTTGCTTCTGCAGACATGAGTCATCTGAACAAGTTACTTGAAAGGGTAGATGAAATGAACAATAATCCTCAGTTCAATAATGTACGCATAACATTTGAGGAGTTCAAAAACTTTGCAGAATTGCGGAAAAAATTAGTACCACTTTCATTGGCTCTTTTCAGCTTTGCAAAAGTAAATGGCCTTTTAACAAGAGACGATTTTCGGCGTGCTGCATCAAGTGTATGCGGTTTATCTCTTTCTAAGAATGTGGTGGAGATTGTTTTCCATCTGTTTGACACAAGTGGGGATGGGAATCTAAGTTCAAATGAGTTTATTAGAGTGCTGCACAAAAGAGAGGGAGAAGTTGGTGGACATGTAGAGACTGGAATCATAGGTTTCTTATCATGTTGCTGGAACTGTGTGAACAAATCTCCAGGTTCATAG 1347 0.392 MSFFSTLRRSSIFIQRFTTSTPSSSSPPPSLPNSNSPRYPNWISPFALASAFALLYYFSKHNSHFNSHFLNNAFTKLSLPENSNNQFLFGDAYRSKVFFNYEKRIRLHSPPEKVFEYFASSRMPEGEVLMNPADLMRAVVPVFPPSESNLVRDGYLKGERNPGHLLCPPSELFMLFDVNRDGLISLREYLFLVTLLSIPESSFSAVFKMFDMDNDGEIDKEEFKRVMASMRSHSRHGIHRRDLEADASVENGRMVKYLFDKDGNGHLGHDKFVQFIRDLHDEILRLEFVHYDFKSQKTISAKDFAHSIVASADMSHLNKLLERVDEMNNNPQFNNVRITFEEFKNFAELRKKLVPLSLALFSFAKVNGLLTRDDFRRAASSVCGLSLSKNVVEIVFHLFDTSGDGNLSSNEFIRVLHKREGEVGGHVETGIIGFLSCCWNCVNKSPGS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03963 448 ProSiteProfiles EF-hand calcium-binding domain profile. 387 422 IPR002048 GO:0005509
Vifa2g03963 448 SUPERFAMILY EF-hand 171 306 IPR011992 -
Vifa2g03963 448 ProSitePatterns EF-hand calcium-binding domain. 400 412 IPR018247 -
Vifa2g03963 448 Gene3D - 250 364 - -
Vifa2g03963 448 Pfam EF hand 172 189 IPR002048 GO:0005509
Vifa2g03963 448 SUPERFAMILY EF-hand 284 419 IPR011992 -
Vifa2g03963 448 ProSiteProfiles EF-hand calcium-binding domain profile. 198 233 IPR002048 GO:0005509
Vifa2g03963 448 Pfam EF hand 204 230 IPR002048 GO:0005509
Vifa2g03963 448 SMART efh_1 168 196 IPR002048 GO:0005509
Vifa2g03963 448 SMART efh_1 391 419 IPR002048 GO:0005509
Vifa2g03963 448 SMART efh_1 202 230 IPR002048 GO:0005509
Vifa2g03963 448 Gene3D - 365 424 - -
Vifa2g03963 448 ProSitePatterns EF-hand calcium-binding domain. 211 223 IPR018247 -
Vifa2g03963 448 CDD EFh 171 228 IPR002048 GO:0005509
Vifa2g03963 448 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 29 444 IPR039800 GO:0005509|GO:0006851
Vifa2g03963 448 ProSiteProfiles EF-hand calcium-binding domain profile. 258 282 IPR002048 GO:0005509
Vifa2g03963 448 CDD EFh_MICU 203 419 - -
Vifa2g03963 448 Gene3D - 109 249 - -
Vifa2g03963 448 Pfam EF-hand domain pair 368 417 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03963 Vifa-Chr2 1166402843 1166404743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03963 76 400 EF-hand Containing Proteins AT4G32060 61.747 4.68e-143 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03963 K22827 - gmx:100786375 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03963 2 1166402843 1166404743 Vifa2g03963 2 1166402843 1166404743 ECH