Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03936 ATGTCGGATTTATCGAAGGATATATCTAAGGATTTATCTAAGGATTTGTCTAAGGATTTATCGAAAGATTTATCGAAAGAGGAATCGGTTCAAATCAGAGAGGTTTGGAACGATAATCTCGTAGAGGAATTCGCGTTGATTCGTGAAGTTGTTGATGATTTCAACTATGTAGCTATGGATACAGAGTTTCCTGGTGTTGTTCTTCGTCCTGTAGGGGTTTTCAAGCATATCAATGATTTTAACTACCAGACTTTGAAGGATAACGTTGATATGTTGAAGCTGATTCAGTTAGGTTTAACTTTCTCTGATGAGAACGGAAACCTACCTACTTGTGGCACTGGGAGTCCTTGCATCTGGCAGTTTAATTTCCGCGAGTTTAATGTTAGTGAGGATATATTTGCGGCTGATTCAGTTGAGCTTTTGCATCAGTGTGGGATTGATTTCACGAAGAATAATGAGAAAGGGATTGATGTGAACCGATTCGGAGAGCTTCTTATGTCGTCCGGGGTTGTGTTGAATGATAACATGCAATGGGTGACTTTTCACAGTGGATATGATTTTGGTTATCTGTTGAAGCTTTTGACTTGCAGAACTTTGCCCGATACGCAATCGGGGTTCTTTGATTTGATCAACATTTATTTTCCGTTGCTGTATGATATAAAACATTTGATGAAATTCCGTAACAGTTTACATGGTGGGTTGAACAAGCTCGCGGAGTTGTTGGAGGTTGAGAGGATTGGTGTTTGCCATCAAGCGGGATCGGATAGTTTACTCACTGCTTGTGCATTTAGGAAATTGAGGGATACTTTCTTCAACGGCGAAACGGAGAAGTATTCTGGTGTGTTGTATGGATTAGGTGTTGAGACTGACTAA 873 0.4009 MSDLSKDISKDLSKDLSKDLSKDLSKEESVQIREVWNDNLVEEFALIREVVDDFNYVAMDTEFPGVVLRPVGVFKHINDFNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTGSPCIWQFNFREFNVSEDIFAADSVELLHQCGIDFTKNNEKGIDVNRFGELLMSSGVVLNDNMQWVTFHSGYDFGYLLKLLTCRTLPDTQSGFFDLINIYFPLLYDIKHLMKFRNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACAFRKLRDTFFNGETEKYSGVLYGLGVETD 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03936 290 Gene3D - 20 288 IPR036397 GO:0003676
Vifa2g03936 290 Pfam CAF1 family ribonuclease 35 156 IPR006941 -
Vifa2g03936 290 SUPERFAMILY Ribonuclease H-like 32 285 IPR012337 -
Vifa2g03936 290 FunFam Putative CCR4-associated factor 1 7 22 289 - -
Vifa2g03936 290 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 30 286 IPR039637 GO:0004535|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03936 Vifa-Chr2 1150809496 1150810368 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03936 K12581 - gmx:100785970 489.574