LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g03918	ATGGGTCACGTAGGCTCAAGCAAAGACGCTAGCATCGCTGGTCTAGACATGAACGATTTACTCAACGACAACATCGACATGGAAATGGACATTGACCTAGACGAAGAAGATCCATCCGAAATCCTCAACGAGCTAGGCGATGATATGGTGAAGTATTTCTGCAAGAAAGCTTCGATGATGTTCTTCAACGAGTACGGTTTGATCAGTCACCAGATCAACTCGTTTAACCAGTTCGTTACCAGTGGACTTCAAAATACATTCAATTCCTTTGGCGATCTCGCCGTTACTCCTGGTTTTGATCCTTCTAAGAAAGGCGATAACGAGCATTATCGTTACGCGACGGTTAAGTTTGGTTCTGTGAGTCTCGATCGACCTAAGTTTTGGTGTGGTGGGGAAAATAATTCTCTGGAGTTGAAGATGCTTCCTAGACATGCGCGTCTTCAGAGGATGACTTATGCTTCCAAAGTGAAAGTGAATGTTGAAGTTGAGGTATATGTTCCGAAGAAAGTTCGGAGTGATAAATTCAAGACTGGGAAAGAGGAATACATTGATAAAGAGGTTATCACGAAAGAGAGCAGGGAAATAACTATTGGTAGGCTGCCTGTTATGGTCAAGTCTGATTTGTGCTGGATGAGTGAAGCTGAAAAAGGTGATTGTGAATTTGACCATGGAGGATATTTTCTGATCAAGGGTGCTGAGAAGATTTTTATTGCACAGGAGCAAATATTTTTGAAAAGGCTCTGGGTGACAACTGCTCCGTATTGGGCAGTTGCATACAAGTCACAGATGAAGAGAAATAGGATGGTTGTTAAATTAGTGGAAAATTCCATTGTTGAAGGAATAAAAAGCGGGGCGAAGCTGCTCACCGCATATTTTCTGTCTGTTGAGGTTCCTGTATGGATACTGTTTTTTGCTCTTGGGGTCACTTCTGATAAAGAGGTTGTTGATCTCATTGATTATGGATTGGGAGACGGAAGAATTGAAAACCTTCTCATTGCATCCATACGTGAGGCGGACGAGAAGTGTGCCGCATTCCGTAGGGGAAATAATGCTCTTCTTTTCCTAGAGGAACATGTTAAAGGTGTCAAGTTTCCACCATCAGAATCTATTGACCAGTGCCTTGACATGTATGTCTTTCCTAACATTAAAGGATTGAAAAGGAAGGCGCGGTATCTTGCATACATGGTGAAGGTTCTTTTACTGGCGTATAATGGCCGCCGAAAAACTGATAACAGGGATGATTTTCGAAATAAGAGGCTTGAGTTGGCTGGTGAGCTACTCGAACGTGAGATTAGAGTGCACTTTGCACATGCTCGGAAGCGAATGGCGAAGGCTCTGCAGAGAGACCTCTATGGAGATCGAGATGTTCGTCCAGTTGAGCACTATCTTGATGCTTCCATTATTACAAATGGTCTTCAAAGAGCATTTTCTACTGGAGCATGGACACATCCTTTTAAAAGGATGGAAAGGATTTCTGGTGTGGTTGCAACTCTTGGCCGAACCAATCCATTGCAAACCATGGCTGAATTAAGAAGAACAAGGCAACAAGTTCAGTACACAGGAAAGGTTGGGGATGCTAGATACCCGCATCCCTCTCACTGGGGTAAGGTTTGTTTCCTCTCTACCCCAGATGGTGAAAATTGTGGACTAGTAAAAAATTTGTCTGTCACAGGAGTAGTAAGTACCAACGTAACTGAATCTATACTTCCTCACCTGTTTGATTGTGGGATGGAAGAACTTGTTGATGATACTACCACTGTTCTTGGAAAAAAAGACAAAGTCTTCCTAAATGGGGAATGGGTTGGAGTTTGTTCGAATTCCGCAGCATTTGTGTCAGAGCTACGAAATCGAAGACGGAAAAATGAATTGCCTCATCAGGTTGAAATCAAAAGAGATCAAATTCAAGAAGAAGTGCGCATATTATCTGATGCAGGAAGGATTCTCCGCCCACTCTTGGTTGTTAGTAATCTGCTCAAGATTAAAGAATCTAAGTCGGAGCATAAATCTTTCCAGTCCCTGTTGGATAATGGCGTGATTGAGCTGATTGGTCCTGAAGAAGAAGAGGACTTCAAGACTGCTTGGGGTGTTGAGTATTTATTTGGCAAAGAGGGAAAATCTTCTGTGAAGTACACGCATTGTGAGCTTGATATGTCGTTCTTATTGGGTCTAAGCTGTTCAATGGTTCCATTTGCAAATCATGACCATGCTAGGAGAGTGTTGTACCAATCCCAGAAACATTCCTCCCAGGCTATTGGCTATTCTACGACAAACCCAAATATAAGAGTCGATGCTCTGTCTCACCAGTTATTCTATCCTCAAAGACCACTATTTCGGACAATGACATCTGATTGTCTTGGAAAACCGGGATATCTAGGTCAAAGTAAACTTCTTCCGAAGTCTGAATTCTATAATGGGCAGAATGCAATTGTAGCTGTTAATGTACATCTAGGATATAATCAAGAAGATTCCTTGGTGATGAACCGTGCTTCTTTGCAGCGTGGTATGTTCAGATCTGAGCACATCAGGAGTTATAAAGCTGAGATTGAAAATAAGGATTCTTCAGAAAAGAGAAAGAAACCTGAAGACATCGTGAATTTTGGAAAGATACAGAGTAAAATCGGTCGAGTTGATAGCCTTGATGATGATGGCTTTCCATTTGTTGGTGCGAATTTGCAGAGTGGTGATATTATTATTGGGCGGTGTGCTGATTCGGGGACAGACCACAGTATAAAGTTAAAACACACTGAAAGGGGTTATGTTCAAAAGGTTGTGCTGTCCTCAAATGATGAGGGGAAGAATTTCGCTACTGTTTCGTTAAGACAGGTTCGAAGTCCTGTTCTTGGAGATAAGTTCTCTAGTATGCATGGACAAAAGGGTGTTTTAGGATTTCTAGAGTCTCAAGAAAATTTTCCTTTCACAAAACAAGAGGCTGCTTTAGGAAAGGGTATTGCTTGTGTTGGTTCATTGAGAAATGCTACCCCTTTCTCCACTCCGTCTGTTGAAGCCATTACTGACCAGCTTCACAGAGCTGGCTTTTCAAGATGGGGAAACGAACGAGTATACAATGGGAGGACTGGTGAGATGGTTCAATCACTAATATTTATGGGCCCAACATTCTACCAGCGACTACACCACATGTCTGAGGACAAAGTGAAGTTCAGGAACACCGGCCCAGTTCACCCGCTAACCCGACAGCCAGTTGCGGACAGGAAGCGGTTTGGAGGTATCAAGTTTGGTGAAATGGAGCGTGATTGCCTGATTGCCCATGGAGCATCTTCCAACTTGTATGAACGTCTCTTCACCCTGAGTGATTCGTCTCAGATACACATTTGTAGTAAATGCAAAAATGTTGCAAATGTGATCTTGCGGCCGGTATCTGGTGGCCGGAAAATACGAGGGCCCTACTGCCGATTCTGTGAATCAGCCGATGACATTGTGGTGGCCAGTGTTCCTTATGGAGCAAAGTTACTGTCCCAGGAGCTGTTCAGCATGGGCATTAACCTCAAATTTGACACCGAGCTTTGCTAG	3528	0.4306	MGHVGSSKDASIAGLDMNDLLNDNIDMEMDIDLDEEDPSEILNELGDDMVKYFCKKASMMFFNEYGLISHQINSFNQFVTSGLQNTFNSFGDLAVTPGFDPSKKGDNEHYRYATVKFGSVSLDRPKFWCGGENNSLELKMLPRHARLQRMTYASKVKVNVEVEVYVPKKVRSDKFKTGKEEYIDKEVITKESREITIGRLPVMVKSDLCWMSEAEKGDCEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVTTAPYWAVAYKSQMKRNRMVVKLVENSIVEGIKSGAKLLTAYFLSVEVPVWILFFALGVTSDKEVVDLIDYGLGDGRIENLLIASIREADEKCAAFRRGNNALLFLEEHVKGVKFPPSESIDQCLDMYVFPNIKGLKRKARYLAYMVKVLLLAYNGRRKTDNRDDFRNKRLELAGELLEREIRVHFAHARKRMAKALQRDLYGDRDVRPVEHYLDASIITNGLQRAFSTGAWTHPFKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLSVTGVVSTNVTESILPHLFDCGMEELVDDTTTVLGKKDKVFLNGEWVGVCSNSAAFVSELRNRRRKNELPHQVEIKRDQIQEEVRILSDAGRILRPLLVVSNLLKIKESKSEHKSFQSLLDNGVIELIGPEEEEDFKTAWGVEYLFGKEGKSSVKYTHCELDMSFLLGLSCSMVPFANHDHARRVLYQSQKHSSQAIGYSTTNPNIRVDALSHQLFYPQRPLFRTMTSDCLGKPGYLGQSKLLPKSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKAEIENKDSSEKRKKPEDIVNFGKIQSKIGRVDSLDDDGFPFVGANLQSGDIIIGRCADSGTDHSIKLKHTERGYVQKVVLSSNDEGKNFATVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQEAALGKGIACVGSLRNATPFSTPSVEAITDQLHRAGFSRWGNERVYNGRTGEMVQSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASSNLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESADDIVVASVPYGAKLLSQELFSMGINLKFDTELC	1175

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vifa2g03918	1175	PANTHER	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	58	1169	IPR015712	GO:0003899\|GO:0006351\|GO:0032549
Vifa2g03918	1175	Gene3D	-	977	1058	IPR037033	GO:0003677\|GO:0003899\|GO:0006351
Vifa2g03918	1175	Gene3D	-	726	975	IPR037033	GO:0003677\|GO:0003899\|GO:0006351
Vifa2g03918	1175	FunFam	DNA-directed RNA polymerase subunit beta	825	944	-	-
Vifa2g03918	1175	Pfam	RNA polymerase Rpb2, domain 4	594	654	IPR007646	GO:0003677\|GO:0003899\|GO:0006351
Vifa2g03918	1175	CDD	RNA_pol_B_RPB2	67	1171	IPR015712	GO:0003899\|GO:0006351\|GO:0032549
Vifa2g03918	1175	Gene3D	RNA polymerase alpha subunit dimerisation domain	1059	1173	-	-
Vifa2g03918	1175	Pfam	RNA polymerase Rpb2, domain 2	289	421	IPR007642	GO:0003677\|GO:0003899\|GO:0006351
Vifa2g03918	1175	Pfam	RNA polymerase Rpb2, domain 5	670	716	IPR007647	GO:0006351
Vifa2g03918	1175	FunFam	DNA-directed RNA polymerase subunit beta	1059	1173	-	-
Vifa2g03918	1175	Gene3D	-	756	944	IPR014724	GO:0003899
Vifa2g03918	1175	SUPERFAMILY	beta and beta-prime subunits of DNA dependent RNA-polymerase	49	1172	-	-
Vifa2g03918	1175	Pfam	RNA polymerase beta subunit	66	458	IPR007644	GO:0003677\|GO:0003899\|GO:0006351
Vifa2g03918	1175	FunFam	DNA-directed RNA polymerase subunit beta	59	244	-	-
Vifa2g03918	1175	FunFam	DNA-directed RNA polymerase subunit beta	409	597	-	-
Vifa2g03918	1175	Pfam	RNA polymerase Rpb2, domain 6	976	1072	IPR007120	GO:0003677\|GO:0003899\|GO:0006351
Vifa2g03918	1175	Pfam	RNA polymerase Rpb2, domain 6	726	975	IPR007120	GO:0003677\|GO:0003899\|GO:0006351
Vifa2g03918	1175	Gene3D	-	409	594	-	-
Vifa2g03918	1175	Gene3D	-	60	242	-	-
Vifa2g03918	1175	Pfam	RNA polymerase Rpb2, domain 7	1074	1172	IPR007641	GO:0003677\|GO:0003899\|GO:0006351
Vifa2g03918	1175	ProSitePatterns	RNA polymerases beta chain signature.	948	960	IPR007121	GO:0003677\|GO:0003899\|GO:0006351
Vifa2g03918	1175	Gene3D	RNA polymerase Rpb2, domain 2	249	408	IPR037034	GO:0003677\|GO:0003899\|GO:0006351
Vifa2g03918	1175	Pfam	RNA polymerase Rpb2, domain 3	498	557	IPR007645	GO:0003677\|GO:0003899\|GO:0006351

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g03918	Vifa-Chr2	1142184644	1142190731	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g03918	K16252		-	gmx:100815934	1935.23

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa2g03918	2	1142184644	1142190731	Vifa2g03918	2	1142184644	1142190731	ECH