Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03881 ATGGCTACTAACGAACGTGACATGTTCTCAGCTGAGATTGTCAACCGTGGGATTGAATCCTCTGGTCCGAACGCCGGTTCTTTGACGTTCTCCGTGAGGGTTCGACGACGCTTACCGGACTTTCTTCAGTCTGTTAACCTTAATGCTGAGATTGGTAGCTTGAGTAAAGAAGATCTTTGGAAGAAGATTTGGGATGATGCAACCTATGATCTTGCTTCTGTTCTCTCTTCTCTTGCTGTTTTTGTTATCACTTTCACTCTTTACTTCATCTCAAAGCCTCGTCCTATTTATCTCATTGATTTTTCATGCTATCAACCAGATGATGAACTCAAGGTATCAAGGGACCAATTGATAGAGCTAGCAAGATCATCAGGAAAATTTGACCAAGAAAGTCTAGATTTTCAAAAAAGGATAGTAATGTCATCAGGAATAGGAGATGAAACCTACATTCCAAAATCAATAGCATCAAGTGAAAACACAGAAACAATGAAAGAAGGTAGAGCTGAAGCATCAATGGTTATGTTTGGAGCACTTGATGAACTCTTTGAAAAAACCGGAATTAGGCCAAAAGATGTTGGTGTTCTTGTAGTAAATTGCAGCATATTCAATCCAACACCATCACTATCAGCAATGATTATAAATCATTATAAGATGAGAGGAAATATTCTGAGCTATAATCTTGGTGGTATGGGTTGTAGTGCTGGAATTATTGCTGTTGATTTGGCTAGGGATATTCTTCAATCTAACCCTAGTAATTATGCTGTTGTTGTGAGTACTGAAATGGTTGGATTCAATTGGTATCAAGGAAAAGAAAGATCTATGCTTATTCCTAATTGTTTCTTTCGTATGGGTTGTTCCGCTGTTTTGCTCTCTAATCGTCGTCGCGATTATAGCCGCGCGAAATATCGTCTTGAACACATTGTTCGTACTCATAAAGGCGCTGATGACCGCAGTTTCAGGTGTGTGTACCAAGAGGAAGATGATCAAAAGTTCAAGGGAATTAAGATAAGTAAGGATTTGATCGAAATCGGCGGAGAAGCTCTGAAAACTAACATCACAACCCTAGGACCATTAGTCCTACCATTTTCCGAACAGCTTATTTTCTTTGCAACCCTAGTTTGGAGGAACTTATTTGGAGGAGGCAAAAAATCTGATAAGAATTCATCCTCATCAAACAAGCCCTACATTCCTAACTACAAACTCGCATTCGAGCATTTCTGCGTGCATGCTGCAAGCAAGGCGATCCTGGACGAGCTTCAAAAGAATCTCGAACTCAGTGACAAAAACATGGAAGCTTCACGAATGACGCTGCATCGATTCGGCAACACTTCTAGCAGCAGCATTTGGTATGAACTTGCTTATATGGAAGCTAAGCAAAAGGTGAAAAGAGGAGACCGTGTTTGGCAACTTGCATTTGGTTCTGGCTTCAAGTGTAACAGTGCTGTTTGGCGTTCTATGGGACGTGTTGCAAAACCTACTTCTAGGAACCCTTGGCTTGACTGCATCAATGCATATCCTGCTCAACTCAATTGA 1533 0.407 MATNERDMFSAEIVNRGIESSGPNAGSLTFSVRVRRRLPDFLQSVNLNAEIGSLSKEDLWKKIWDDATYDLASVLSSLAVFVITFTLYFISKPRPIYLIDFSCYQPDDELKVSRDQLIELARSSGKFDQESLDFQKRIVMSSGIGDETYIPKSIASSENTETMKEGRAEASMVMFGALDELFEKTGIRPKDVGVLVVNCSIFNPTPSLSAMIINHYKMRGNILSYNLGGMGCSAGIIAVDLARDILQSNPSNYAVVVSTEMVGFNWYQGKERSMLIPNCFFRMGCSAVLLSNRRRDYSRAKYRLEHIVRTHKGADDRSFRCVYQEEDDQKFKGIKISKDLIEIGGEALKTNITTLGPLVLPFSEQLIFFATLVWRNLFGGGKKSDKNSSSSNKPYIPNYKLAFEHFCVHAASKAILDELQKNLELSDKNMEASRMTLHRFGNTSSSSIWYELAYMEAKQKVKRGDRVWQLAFGSGFKCNSAVWRSMGRVAKPTSRNPWLDCINAYPAQLN 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03881 510 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 404 484 IPR013747 -
Vifa2g03881 510 CDD CHS_like 78 483 - -
Vifa2g03881 510 PIRSF Very_long_ch_3-ktacl-CoA_syn 27 510 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vifa2g03881 510 SUPERFAMILY Thiolase-like 82 299 IPR016039 GO:0016746
Vifa2g03881 510 Gene3D - 99 486 IPR016039 GO:0016746
Vifa2g03881 510 Pfam FAE1/Type III polyketide synthase-like protein 89 376 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vifa2g03881 510 PANTHER 3-KETOACYL-COA SYNTHASE 74 507 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vifa2g03881 510 FunFam 3-ketoacyl-CoA synthase 106 485 - -
Vifa2g03881 510 SUPERFAMILY Thiolase-like 305 485 IPR016039 GO:0016746
Vifa2g03881 510 Coils Coil 416 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03881 Vifa-Chr2 1134165210 1134167820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03881 3 509 Miscellaneous Gene Families AT2G26250 70.000 0.0 807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03881 K15397 - gmx:100778487 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03881 2 1134165210 1134167820 Vifa2g03881 2 1134165210 1134167820 ECH